Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 0.0e+00 2744.1 1343 100.0
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 0.0e+00 1411.4 1377 55.5
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 0.0e+00 1292.3 1369 51.9
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 8.6e-276 954.5 1354 42.7
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 6.6e-260 901.7 1401 40.8
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 3.4e-240 836.3 1403 36.9
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 3.4e-240 836.3 1404 37.9
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 2.4e-233 813.5 1262 40.9
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 1.9e-230 803.9 1399 37.2
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 3.2e-230 803.1 1384 36.6
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 3.1e-225 786.6 1405 38.4
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 2.9e-223 780.0 1405 35.9
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 1.1e-222 778.1 1409 36.6
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 5.5e-222 775.8 1418 36.9
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 1.2e-221 774.6 1389 36.4
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 1.1e-219 768.1 1411 36.6
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 1.5e-219 767.7 1411 37.2
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 2.5e-219 766.9 1402 37.7
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 7.4e-219 765.4 1437 36.3
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 3.7e-218 763.1 1402 36.7
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 6.2e-218 762.3 1402 37.2
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 1.1e-214 751.5 1415 37.1
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 6.0e-213 745.7 1420 36.5
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 2.9e-207 726.9 1416 35.5
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.6e-205 721.1 1425 35.4
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 1.7e-202 711.1 1410 34.3
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 2.8e-202 710.3 1391 35.4
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 6.3e-202 709.1 1375 34.8
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 7.7e-200 702.2 1430 35.4
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 8.5e-199 698.7 1372 34.7
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 7.9e-197 692.2 1446 34.5
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 1.0e-196 691.8 1486 34.2
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 3.3e-195 686.8 1390 35.5
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 7.4e-195 685.6 1411 35.2
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 7.0e-193 679.1 1388 35.1
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 7.7e-192 675.6 1339 34.4
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 1.7e-191 674.5 1408 35.4
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 2.5e-190 670.6 1184 36.9
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 2.1e-189 667.5 1439 34.4
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 6.7e-188 662.5 1406 34.2
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 8.8e-188 662.1 1370 34.1
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 1.8e-185 654.4 1391 34.4
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.8e-185 654.4 1148 36.0
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 2.0e-184 651.0 1175 36.3
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 2.0e-184 651.0 1375 32.9
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 5.5e-182 642.9 1359 33.8
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 9.4e-182 642.1 1391 33.8
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 5.7e-179 632.9 1409 32.4
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 2.2e-178 630.9 1414 33.9
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 7.0e-177 625.9 1410 33.3
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 1.2e-176 625.2 1400 34.4
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 7.7e-176 622.5 1389 33.7
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 6.5e-175 619.4 1325 34.3
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 2.5e-174 617.5 799 45.1
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 1.2e-173 615.1 1413 33.5
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 2.0e-171 607.8 1388 33.8
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 5.9e-168 596.3 1358 34.3
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.0e-167 595.5 1386 32.8
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 6.6e-167 592.8 1381 32.6
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.2e-165 588.6 1294 32.8
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 1.5e-163 581.6 1392 31.9
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 1.0e-156 558.9 1419 31.2
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 2.3e-156 557.8 1081 35.1
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 4.6e-152 543.5 1234 33.5
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 9.5e-142 509.2 1396 29.6
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 2.9e-138 497.7 1401 30.6
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 3.7e-138 497.3 1385 29.7
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 3.5e-136 490.7 1381 29.8
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 1.3e-135 488.8 1382 29.7
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 1.7e-135 488.4 1392 29.0
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 1.7e-135 488.4 1394 29.1
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 1.5e-134 485.3 1398 29.0
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 2.5e-134 484.6 1481 30.7
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 2.8e-133 481.1 1377 29.5
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 2.8e-133 481.1 1374 29.3
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 1.4e-132 478.8 1391 29.6
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 1.8e-132 478.4 1524 27.9
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 2.6e-131 474.6 1388 29.3
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 2.9e-130 471.1 1388 29.5
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 1.4e-129 468.8 1398 30.3
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 8.1e-117 426.4 977 33.3
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 1.3e-114 419.1 411 51.6
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 7.1e-113 413.3 1402 27.5
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 1.8e-111 408.7 1226 30.2
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 4.3e-110 404.1 944 31.8
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 4.5e-107 394.0 1011 31.5
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 2.1e-88 332.0 838 32.6
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 6.1e-80 303.9 468 39.7
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 4.4e-70 271.2 441 37.4
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.4e-68 266.2 854 28.2
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.6e-67 262.7 375 41.6
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.9e-67 260.8 357 41.5
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 5.5e-65 254.2 373 42.4
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 3.6e-64 251.5 651 31.2
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 3.7e-61 241.5 454 36.1
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 8.5e-58 230.3 350 40.9
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 6.3e-53 214.2 373 34.9
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 4.2e-49 201.4 470 31.5
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 8.9e-47 193.7 273 39.2
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 4.9e-45 188.0 364 35.4
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.2e-44 185.3 235 43.0
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.6e-40 172.9 208 43.8
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 4.7e-40 171.4 268 39.6
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 1.0e-39 170.2 558 28.0
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 2.6e-38 165.6 1247 20.9
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 7.8e-35 154.1 206 43.2
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 3.9e-34 151.8 357 32.2
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.5e-33 149.8 175 46.3
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.1e-31 142.1 678 24.0
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 5.4e-28 131.3 273 32.2
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 1.0e-26 127.1 103 58.3
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 5.1e-26 124.8 221 37.1
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 1.5e-25 123.2 610 23.3
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 3.1e-23 115.5 417 29.3
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 3.1e-23 115.5 422 23.9
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 2.6e-22 112.5 562 24.4
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 4.4e-22 111.7 207 34.3
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 1.1e-20 107.1 268 30.2
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 1.7e-18 99.8 197 35.0
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 5.6e-17 94.7 221 31.2
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 6.2e-16 91.3 164 34.1
unitig_19.g30006 Utricularia gibba HOM05D006182 ORTHO05D007236 3.5e-11 75.5 154 34.4
Solyc07g021115.1 Solanum lycopersicum HOM05D006182 ORTHO05D007236 6.2e-08 64.7 78 43.6
AagrBONN_evm.TU.Sc2ySwM_368.213 Anthoceros agrestis HOM05D014773 ORTHO05D007236 7.6e-06 57.8 363 21.5


User provided reference genes

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