Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.1e-49 198.7 104 100.0
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.5e-23 112.8 80 76.2
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.2e-20 103.2 81 71.6
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.3e-19 99.0 67 73.1
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 3.0e-19 98.6 76 64.5
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 3.0e-19 98.6 76 64.5
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 3.9e-19 98.2 77 71.4
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 6.7e-19 97.4 92 57.6
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.7e-19 97.1 72 68.1
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.9e-18 95.9 104 51.9
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.9e-18 95.9 72 68.1
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.9e-18 95.9 100 56.0
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 1.9e-18 95.9 89 58.4
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.9e-18 95.9 74 67.6
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.5e-18 95.5 78 65.4
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.3e-18 95.1 74 70.3
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 3.3e-18 95.1 71 66.2
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.3e-18 94.7 77 62.3
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.3e-18 94.7 77 62.3
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 4.3e-18 94.7 78 61.5
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 5.7e-18 94.4 77 64.9
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 5.7e-18 94.4 65 73.8
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 7.4e-18 94.0 80 65.0
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 9.7e-18 93.6 75 66.7
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 9.7e-18 93.6 67 70.1
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 1.3e-17 93.2 78 61.5
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.3e-17 93.2 75 66.7
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.3e-17 93.2 77 63.6
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 3.7e-17 91.7 77 64.9
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.7e-17 91.7 75 64.0
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.7e-17 91.7 75 64.0
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 4.8e-17 91.3 78 59.0
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.3e-17 90.9 77 62.3
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 6.3e-17 90.9 75 66.7
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 8.2e-17 90.5 80 58.8
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 8.2e-17 90.5 77 63.6
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.1e-16 90.1 81 59.3
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.1e-16 90.1 75 65.3
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.1e-16 90.1 76 61.8
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 1.4e-16 89.7 69 65.2
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.8e-16 89.4 75 60.0
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 1.8e-16 89.4 75 60.0
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.8e-16 89.4 75 60.0
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.8e-16 89.4 77 58.4
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 2.4e-16 89.0 81 59.3
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.1e-16 88.6 78 60.3
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 3.1e-16 88.6 69 63.8
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 4.1e-16 88.2 77 62.3
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 4.1e-16 88.2 81 58.0
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 4.1e-16 88.2 76 60.5
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 4.1e-16 88.2 78 60.3
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 5.3e-16 87.8 77 58.4
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 5.3e-16 87.8 76 60.5
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 6.9e-16 87.4 76 59.2
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 6.9e-16 87.4 76 59.2
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 6.9e-16 87.4 81 58.0
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 6.9e-16 87.4 73 57.5
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 9.0e-16 87.0 76 59.2
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 9.0e-16 87.0 75 60.0
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.2e-15 86.7 74 58.1
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.2e-15 86.7 76 59.2
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-15 86.3 76 59.2
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.5e-15 86.3 76 56.6
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.0e-15 85.9 76 57.9
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.0e-15 85.9 74 59.5
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.0e-15 85.9 76 59.2
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.0e-15 85.9 60 70.0
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 2.0e-15 85.9 76 57.9
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 2.0e-15 85.9 79 58.2
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 2.6e-15 85.5 76 55.3
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.6e-15 85.5 106 49.1
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.6e-15 85.5 77 61.0
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.4e-15 85.1 76 56.6
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 3.4e-15 85.1 76 56.6
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.4e-15 85.1 76 57.9
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 4.5e-15 84.7 72 58.3
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 5.9e-15 84.3 75 58.7
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 5.9e-15 84.3 82 59.8
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 5.9e-15 84.3 78 57.7
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 5.9e-15 84.3 59 71.2
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 7.7e-15 84.0 81 55.6
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.0e-14 83.6 78 53.8
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.0e-14 83.6 77 58.4
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.0e-14 83.6 76 57.9
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.3e-14 83.2 104 47.1
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 1.3e-14 83.2 76 61.8
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.3e-14 83.2 75 58.7
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 2.2e-14 82.4 77 55.8
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 2.9e-14 82.0 76 56.6
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 2.9e-14 82.0 76 56.6
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.9e-14 82.0 64 64.1
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 2.9e-14 82.0 80 56.2
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 2.9e-14 82.0 78 57.7
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 3.8e-14 81.6 57 70.2
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.8e-14 81.6 76 56.6
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.8e-14 81.6 81 55.6
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.8e-14 81.6 77 55.8
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 5.0e-14 81.3 82 51.2
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 5.0e-14 81.3 76 52.6
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 5.0e-14 81.3 72 59.7
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 6.5e-14 80.9 77 54.5
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 6.5e-14 80.9 76 55.3
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 6.5e-14 80.9 76 55.3
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 6.5e-14 80.9 71 59.2
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 6.5e-14 80.9 76 56.6
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 6.5e-14 80.9 78 57.7
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 8.5e-14 80.5 75 52.0
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.5e-14 80.5 72 59.7
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.1e-13 80.1 77 57.1
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 2.5e-13 79.0 75 56.0
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 3.2e-13 78.6 67 58.2
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 3.2e-13 78.6 76 57.9
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 4.2e-13 78.2 70 60.0
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.2e-13 78.2 70 60.0
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 5.5e-13 77.8 76 53.9
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 5.5e-13 77.8 77 51.9
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 7.2e-13 77.4 77 51.9
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 7.2e-13 77.4 77 54.5
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 9.4e-13 77.0 71 57.7
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 9.4e-13 77.0 73 52.1
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 1.6e-12 76.3 81 51.9
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 2.7e-12 75.5 82 47.6
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 3.6e-12 75.1 78 56.4
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 6.1e-12 74.3 76 53.9
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 7.9e-12 73.9 74 51.4
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 1.0e-11 73.6 53 64.2
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.4e-11 73.2 74 45.9
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.4e-11 73.2 78 50.0
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 2.0e-10 69.3 81 50.6
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.3e-10 68.6 44 72.7
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 5.7e-10 67.8 62 59.7
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 7.4e-10 67.4 62 50.0
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 7.4e-10 67.4 77 50.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.3e-09 66.6 69 47.8
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 2.2e-09 65.9 73 47.9
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 2.8e-09 65.5 35 85.7
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 6.3e-09 64.3 53 56.6
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 1.1e-08 63.5 78 44.9
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.8e-08 62.8 77 42.9
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.1e-08 62.0 77 46.8
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.9e-08 60.8 40 67.5
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.9e-08 60.8 40 67.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 6.9e-08 60.8 40 67.5
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.0e-07 59.3 74 40.5
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.6e-07 58.9 95 38.9
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.7e-06 56.2 62 50.0
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.7e-06 56.2 76 44.7
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.5e-06 54.3 71 43.7


User provided reference genes

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