Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0914 Salvia bowleyana HOM05D006768 ORTHO05D008436 5.1e-51 204.1 104 100.0
SalBow7G4665 Salvia bowleyana HOM05D006768 ORTHO05D008436 5.1e-51 204.1 104 100.0
Nitab4.5_0010364g0020 Nicotiana tabacum HOM05D006768 ORTHO05D008436 2.8e-41 171.8 95 87.4
Solyc11g013100.2 Solanum lycopersicum HOM05D006768 ORTHO05D008436 3.6e-41 171.4 95 85.3
Sopen11g008160 Solanum pennellii HOM05D006768 ORTHO05D008436 3.6e-41 171.4 95 85.3
Nitab4.5_0005357g0030 Nicotiana tabacum HOM05D006768 ORTHO05D008436 4.8e-41 171.0 102 81.4
MELO3C011580.2 Cucumis melo HOM05D006768 ORTHO05D008436 2.4e-40 168.7 95 82.1
ClCG08G005390 Citrullus lanatus HOM05D006768 ORTHO05D008436 3.1e-40 168.3 95 82.1
CsaV3_6G003570 Cucumis sativus L. HOM05D006768 ORTHO05D008436 4.0e-40 167.9 96 80.2
Manes.02G160800 Manihot esculenta HOM05D006768 ORTHO05D008436 2.0e-39 165.6 95 84.2
MSTRG.25394 Avicennia marina HOM05D006768 ORTHO05D008436 3.4e-39 164.9 98 86.7
Manes.18G074850 Manihot esculenta HOM05D006768 ORTHO05D008436 3.4e-39 164.9 95 82.1
Potri.002G086600 Populus trichocarpa HOM05D006768 ORTHO05D008436 4.5e-39 164.5 95 84.2
Potri.005G174700 Populus trichocarpa HOM05D006768 ORTHO05D008436 2.9e-38 161.8 95 82.1
Cpa.g.sc36.24 Carica papaya HOM05D006768 ORTHO05D008436 4.9e-38 161.0 100 83.0
Sed0001868 Sechium edule HOM05D006768 ORTHO05D008436 4.9e-38 161.0 95 77.9
Gohir.A05G233000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.4e-37 159.5 99 82.8
Hma1.2p1_0009F.1_g006320 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 1.4e-37 159.5 100 80.0
CAN.G342.8 Capsicum annuum HOM05D006768 ORTHO05D008436 1.9e-37 159.1 95 82.1
Thecc.08G120600 Theobroma cacao HOM05D006768 ORTHO05D008436 1.9e-37 159.1 99 82.8
Aqoxy6G00156 Aquilegia oxysepala HOM05D006768 ORTHO05D008436 4.2e-37 157.9 97 79.4
COL.COLO4_38328 Corchorus olitorius HOM05D006768 ORTHO05D008436 4.2e-37 157.9 97 82.5
Duzib116G0009 Durio zibethinus HOM05D006768 ORTHO05D008436 5.4e-37 157.5 98 80.6
Cc10_g11060 Coffea canephora HOM05D006768 ORTHO05D008436 9.3e-37 156.8 98 75.5
Gohir.D05G235400 Gossypium hirsutum HOM05D006768 ORTHO05D008436 1.2e-36 156.4 99 78.8
PGSC0003DMG400014092 Solanum tuberosum HOM05D006768 ORTHO05D008436 1.6e-36 156.0 95 78.9
vmacro00812 Vaccinium macrocarpon HOM05D006768 ORTHO05D008436 1.6e-36 156.0 104 74.0
CAN.G2.37 Capsicum annuum HOM05D006768 ORTHO05D008436 3.5e-36 154.8 95 80.0
Gohir.D02G081200 Gossypium hirsutum HOM05D006768 ORTHO05D008436 3.5e-36 154.8 99 78.8
Duzib041G0323 Durio zibethinus HOM05D006768 ORTHO05D008436 1.8e-35 152.5 99 78.8
CSS0006116 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 3.9e-35 151.4 95 75.8
Dinv27347 Davidia involucrata HOM05D006768 ORTHO05D008436 5.1e-35 151.0 96 77.1
GSVIVG01008909001 Vitis vinifera HOM05D006768 ORTHO05D008436 8.7e-35 150.2 96 78.1
Migut.C01157 Erythranthe guttata HOM05D006768 ORTHO05D008436 1.5e-34 149.4 96 81.2
CSS0001196 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 1.9e-34 149.1 96 78.1
PGR044G1209 Punica granatum HOM05D006768 ORTHO05D008436 1.9e-34 149.1 95 76.8
Gohir.A02G074000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 5.6e-34 147.5 99 79.8
TWI56G0584 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 7.4e-34 147.1 98 77.6
Gorai.005G090800 Gossypium raimondii HOM05D006768 ORTHO05D008436 9.6e-34 146.7 99 74.7
Sabra02G0068000 Salix brachista HOM05D006768 ORTHO05D008436 9.6e-34 146.7 90 81.1
Sabra05G0131800 Salix brachista HOM05D006768 ORTHO05D008436 9.6e-34 146.7 94 75.5
TAR625G0411 Trochodendron aralioides HOM05D006768 ORTHO05D008436 1.3e-33 146.4 97 75.3
RhsimUnG0095400 Rhododendron simsii HOM05D006768 ORTHO05D008436 1.6e-33 146.0 94 76.6
FvH4_2g26460 Fragaria vesca HOM05D006768 ORTHO05D008436 2.1e-33 145.6 95 78.9
FAN15G1404 Fragaria x ananassa HOM05D006768 ORTHO05D008436 2.1e-33 145.6 95 78.9
RcHm_v2.0_Chr6g0295131 Rosa chinensis HOM05D006768 ORTHO05D008436 2.1e-33 145.6 95 78.9
CiPaw.06G026900 Carya illinoinensis HOM05D006768 ORTHO05D008436 2.8e-33 145.2 101 73.3
EL10Ac1g00013 Beta vulgaris HOM05D006768 ORTHO05D008436 3.7e-33 144.8 103 69.9
HanXRQChr08g0223691 Helianthus annuus HOM05D006768 ORTHO05D008436 3.7e-33 144.8 98 77.6
FAN24G3387 Fragaria x ananassa HOM05D006768 ORTHO05D008436 1.1e-32 143.3 95 77.9
Ciclev10002911m.g Citrus clementina HOM05D006768 ORTHO05D008436 9.0e-32 140.2 104 73.1
Gorai.009G243700 Gossypium raimondii HOM05D006768 ORTHO05D008436 9.0e-32 140.2 92 76.1
arahy.Tifrunner.gnm1.ann1.BFT67J Arachis hypogaea HOM05D006768 ORTHO05D008436 2.0e-31 139.0 105 67.6
arahy.Tifrunner.gnm1.ann1.V4QE5E Arachis hypogaea HOM05D006768 ORTHO05D008436 2.0e-31 139.0 105 67.6
unitig_21.g20584 Utricularia gibba HOM05D006768 ORTHO05D008436 2.0e-31 139.0 96 68.8
Lsat_1_v5_gn_4_25061 Lactuca sativa HOM05D006768 ORTHO05D008436 2.6e-31 138.7 97 73.2
TAR376G1039 Trochodendron aralioides HOM05D000018 ORTHO05D001920 3.4e-31 138.3 85 77.6
Atru.chr13.1393 Acer truncatum HOM05D006768 ORTHO05D008436 1.3e-30 136.3 104 67.3
Prupe.1G502600 Prunus persica HOM05D006768 ORTHO05D008436 1.7e-30 136.0 95 73.7
Hma1.2p1_0073F.1_g038410 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 6.5e-30 134.0 102 66.7
Eucgr.F04346 Eucalyptus grandis HOM05D006768 ORTHO05D008436 8.4e-30 133.7 88 78.4
AUR62004718 Chenopodium quinoa HOM05D006768 ORTHO05D008436 4.2e-29 131.3 101 69.3
ECA233G5727 Erigeron canadensis HOM05D006768 ORTHO05D008436 4.2e-29 131.3 97 68.0
MD08G1168400 Malus domestica HOM05D006768 ORTHO05D008436 4.2e-29 131.3 94 71.3
MBI06_g02573_MAGBIO Magnolia biondii HOM05D006768 ORTHO05D008436 7.1e-29 130.6 112 62.5
Medtr5g059100 Medicago truncatula HOM05D006768 ORTHO05D008436 1.6e-28 129.4 105 70.5
Hund27041 Selenicereus undatus HOM05D006768 ORTHO05D008436 2.7e-28 128.6 105 69.5
ECA234G1078 Erigeron canadensis HOM05D006768 ORTHO05D008436 4.6e-28 127.9 99 65.7
Lalb_Chr04g0253331 Lupinus albus HOM05D006768 ORTHO05D008436 4.6e-28 127.9 106 65.1
Haze_00489 Corylus avellana HOM05D006768 ORTHO05D008436 1.0e-27 126.7 78 79.5
BcaB01g02871 Brassica carinata HOM05D006768 ORTHO05D008436 1.8e-27 125.9 98 65.3
HanXRQChr16g0527071 Helianthus annuus HOM05D006768 ORTHO05D008436 3.0e-27 125.2 97 68.0
FAN20G0213 Fragaria x ananassa HOM05D000048 ORTHO05D004674 5.1e-27 124.4 89 75.3
Thhalv10029535m.g Eutrema salsugineum HOM05D006768 ORTHO05D008436 8.7e-27 123.6 98 63.3
TWI12G0503 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 8.7e-27 123.6 99 67.7
THA.LOC104817125 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 2.5e-26 122.1 102 65.7
CANSAT25G0473 Cannabis sativa HOM05D006768 ORTHO05D008436 3.3e-26 121.7 105 62.9
SGA_v2.0_scaffold24G10479 Striga asiatica HOM05D006768 ORTHO05D008436 3.3e-26 121.7 102 59.8
Psat2g079320 Pisum sativum HOM05D006768 ORTHO05D008436 4.3e-26 121.3 101 68.3
Sp6g09840 Schrenkiella parvula HOM05D006768 ORTHO05D008436 1.3e-25 119.8 108 64.8
Sc23g0000800 Simmondsia chinensis HOM05D006768 ORTHO05D008436 1.3e-25 119.8 83 73.5
BcaC01g04777 Brassica carinata HOM05D006768 ORTHO05D008436 1.6e-25 119.4 106 65.1
A03p28000 Brassica napus HOM05D006768 ORTHO05D008436 1.6e-25 119.4 106 65.1
C03p33820 Brassica napus HOM05D006768 ORTHO05D008436 1.6e-25 119.4 106 65.1
BolC3t15699H Brassica oleracea HOM05D006768 ORTHO05D008436 1.6e-25 119.4 106 65.1
CARHR259330 Cardamine hirsuta HOM05D006768 ORTHO05D008436 1.6e-25 119.4 104 64.4
CDE04G1345 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 1.6e-25 119.4 97 61.9
BraA03t12013Z Brassica rapa HOM05D006768 ORTHO05D008436 2.1e-25 119.0 107 64.5
QL09p036660 Quercus lobata HOM05D006768 ORTHO05D008436 2.1e-25 119.0 105 61.0
PSO170G4432 Papaver somniferum HOM05D006768 ORTHO05D008436 2.8e-25 118.6 96 65.6
PSO528G0064 Papaver somniferum HOM05D006768 ORTHO05D008436 2.8e-25 118.6 96 65.6
TPR.G8510 Trifolium pratense HOM05D006768 ORTHO05D008436 3.7e-25 118.2 107 61.7
Peaxi162Scf00000g61010 Petunia axillaris HOM05D006768 ORTHO05D008436 6.2e-25 117.5 63 90.5
Glyma.13G082200 Glycine max HOM05D006768 ORTHO05D008436 1.8e-24 115.9 104 63.5
Phvul.008G165800 Phaseolus vulgaris HOM05D006768 ORTHO05D008436 1.8e-24 115.9 107 60.7
Lj1g0025240 Lotus japonicus HOM05D006768 ORTHO05D008436 4.1e-24 114.8 109 59.6
Glyma.14G163200 Glycine max HOM05D006768 ORTHO05D008436 9.0e-24 113.6 104 62.5
CSS0018251 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 2.0e-23 112.5 80 73.8
VMungo0647G1658 Vigna mungo HOM05D006768 ORTHO05D008436 3.4e-23 111.7 108 59.3
FAN27G1871 Fragaria x ananassa HOM05D000048 ORTHO05D004674 7.6e-23 110.5 78 76.9
CDE08G1444 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 3.8e-22 108.2 102 60.8
AL6G41870 Arabidopsis lyrata HOM05D006768 ORTHO05D008436 4.2e-21 104.8 105 58.1
HPP92_011177 Vanilla planifolia HOM05D006768 ORTHO05D008436 4.2e-21 104.8 98 60.2
Zm00001eb398080 Zea mays HOM05D006768 ORTHO05D008436 9.3e-21 103.6 107 54.2
AT4G08230 Arabidopsis thaliana HOM05D006768 ORTHO05D008436 1.6e-20 102.8 108 58.3
THA.LOC104806813 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 2.7e-20 102.1 102 56.9
Os03g0263700 Oryza sativa ssp. japonica HOM05D006768 ORTHO05D008436 3.5e-20 101.7 103 57.3
Carub.0006s2676 Capsella rubella HOM05D006768 ORTHO05D008436 2.3e-19 99.0 107 54.2
Zm00001eb011610 Zea mays HOM05D006768 ORTHO05D008436 5.1e-19 97.8 106 53.8
SEGI_37020 Sequoiadendron giganteum HOM05D006768 ORTHO05D008436 2.5e-18 95.5 98 54.1
Sabra05G0131600 Salix brachista HOM05D006768 ORTHO05D008436 3.1e-16 88.6 57 80.7
AUR62023633 Chenopodium quinoa HOM05D006768 ORTHO05D008436 1.5e-15 86.3 69 71.0
Aa31LG9G14330 Aethionema arabicum HOM05D006768 ORTHO05D008436 2.6e-15 85.5 83 62.7
Ca_28007_v3 Cicer arietinum L. HOM05D006768 ORTHO05D008436 2.6e-15 85.5 80 65.0
Nitab4.5_0001142g0120 Nicotiana tabacum HOM05D006768 ORTHO05D008436 3.4e-15 85.1 88 52.3
Nn1g08704 Nelumbo nucifera HOM05D006768 ORTHO05D008436 1.4e-13 79.7 50 82.0
Pp3c13_12030 Physcomitrium patens HOM05D006768 ORTHO05D008436 3.6e-12 75.1 113 46.0
Mapoly0043s0020 Marchantia polymorpha HOM05D006768 ORTHO05D008436 2.3e-11 72.4 113 45.1
DCAR_014111 Daucus carota HOM05D006768 ORTHO05D008436 8.2e-09 63.9 55 67.3
AagrBONN_evm.TU.Sc2ySwM_344.1603 Anthoceros agrestis HOM05D006768 ORTHO05D008436 9.1e-08 60.5 100 43.0
SMO308G0024 Selaginella moellendorffii HOM05D006768 ORTHO05D008436 2.2e-06 55.8 97 41.2


User provided reference genes

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