Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 6.9e-47 190.3 95 100.0
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.2e-27 126.3 92 70.7
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.0e-23 110.5 88 58.0
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.1e-20 103.2 88 55.7
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.1e-20 103.2 94 51.1
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.2e-20 101.7 94 53.2
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 3.2e-20 101.7 95 53.7
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 5.5e-20 100.9 95 56.8
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.2e-19 99.8 95 55.8
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.6e-19 99.4 95 53.7
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 2.7e-19 98.6 81 55.6
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 3.6e-19 98.2 94 54.3
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.0e-18 96.7 95 52.6
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.0e-18 96.7 91 50.5
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 1.8e-18 95.9 84 56.0
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.3e-18 95.5 91 49.5
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 4.0e-18 94.7 97 52.6
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.8e-18 94.0 94 51.1
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 6.8e-18 94.0 92 52.2
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 8.8e-18 93.6 88 54.5
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.8e-18 93.6 88 54.5
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 8.8e-18 93.6 91 48.4
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 8.8e-18 93.6 92 51.1
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.2e-17 93.2 94 50.0
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-17 92.4 84 53.6
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-17 92.4 84 53.6
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 2.0e-17 92.4 94 51.1
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.6e-17 92.0 95 49.5
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 2.6e-17 92.0 99 49.5
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 4.4e-17 91.3 95 46.3
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.7e-17 90.9 97 50.5
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-16 89.7 90 48.9
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.7e-16 89.4 92 45.7
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.8e-16 87.8 73 60.3
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 6.3e-16 87.4 92 54.3
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.1e-15 86.7 78 56.4
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-15 86.7 94 46.8
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.8e-15 85.9 96 42.7
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-15 85.5 94 48.9
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.4e-15 85.5 96 44.8
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 2.4e-15 85.5 97 47.4
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 4.1e-15 84.7 94 45.7
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 4.1e-15 84.7 94 44.7
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 4.1e-15 84.7 94 44.7
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 5.4e-15 84.3 95 46.3
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 5.4e-15 84.3 96 47.9
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 5.4e-15 84.3 88 46.6
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.0e-15 84.0 95 47.4
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 7.0e-15 84.0 96 42.7
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.2e-14 83.2 91 41.8
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.2e-14 83.2 96 45.8
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 1.6e-14 82.8 94 43.6
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 2.0e-14 82.4 93 45.2
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-14 82.4 96 46.9
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 2.0e-14 82.4 96 43.8
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 2.0e-14 82.4 95 45.3
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.7e-14 82.0 92 44.6
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.7e-14 82.0 96 43.8
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.7e-14 82.0 96 43.8
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 3.5e-14 81.6 60 58.3
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 89 47.2
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 95 45.3
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 95 41.1
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 94 43.6
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 4.5e-14 81.3 95 44.2
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.9e-14 80.9 95 44.2
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 5.9e-14 80.9 92 48.9
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 7.7e-14 80.5 96 45.8
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.0e-13 80.1 93 44.1
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 1.0e-13 80.1 83 47.0
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-13 79.7 85 42.4
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-13 79.7 99 43.4
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-13 79.7 85 42.4
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 1.3e-13 79.7 86 48.8
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.3e-13 79.7 51 64.7
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.3e-13 79.7 51 64.7
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 2.9e-13 78.6 83 50.6
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.9e-13 78.6 95 44.2
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 3.8e-13 78.2 103 41.7
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 3.8e-13 78.2 73 50.7
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 5.0e-13 77.8 94 45.7
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 5.0e-13 77.8 94 45.7
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 5.0e-13 77.8 76 51.3
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.0e-13 77.8 98 48.0
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 5.0e-13 77.8 95 45.3
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 6.5e-13 77.4 92 39.1
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 6.5e-13 77.4 95 45.3
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 6.5e-13 77.4 94 42.6
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.5e-13 77.4 98 48.0
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 8.6e-13 77.0 49 65.3
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 8.6e-13 77.0 73 43.8
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.1e-12 76.6 88 44.3
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 1.1e-12 76.6 70 51.4
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 1.1e-12 76.6 85 42.4
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-12 76.6 94 40.4
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.1e-12 76.6 50 66.0
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 1.1e-12 76.6 50 66.0
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 1.5e-12 76.3 53 60.4
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.9e-12 75.9 95 42.1
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 3.2e-12 75.1 93 46.2
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 3.2e-12 75.1 52 63.5
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 4.2e-12 74.7 95 42.1
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 4.2e-12 74.7 92 38.0
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.2e-12 74.7 91 39.6
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 4.2e-12 74.7 83 45.8
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.2e-12 74.7 81 45.7
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.5e-12 74.3 94 40.4
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 5.5e-12 74.3 92 40.2
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 5.5e-12 74.3 96 43.8
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 7.2e-12 73.9 88 42.0
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 7.2e-12 73.9 51 56.9
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 9.5e-12 73.6 93 39.8
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 9.5e-12 73.6 95 42.1
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 9.5e-12 73.6 52 59.6
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.2e-11 73.2 93 43.0
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 1.6e-11 72.8 91 40.7
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 2.1e-11 72.4 49 63.3
FAN18G2182 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-11 72.0 93 45.2
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 3.6e-11 71.6 72 47.2
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.6e-11 71.6 93 38.7
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 3.6e-11 71.6 84 48.8
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.7e-11 71.2 94 38.3
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 4.7e-11 71.2 52 51.9
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 4.7e-11 71.2 92 39.1
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 4.7e-11 71.2 93 38.7
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 6.1e-11 70.9 94 39.4
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 6.1e-11 70.9 92 41.3
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.1e-11 70.9 93 36.6
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 6.1e-11 70.9 94 37.2
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 8.0e-11 70.5 91 37.4
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 8.0e-11 70.5 45 66.7
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 8.0e-11 70.5 52 51.9
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.0e-10 70.1 92 34.8
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 1.0e-10 70.1 97 40.2
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.0e-10 70.1 92 43.5
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-10 69.7 70 45.7
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.8e-10 69.3 90 38.9
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.8e-10 69.3 89 33.7
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.3e-10 68.9 93 34.4
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.3e-10 68.9 95 40.0
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 2.3e-10 68.9 105 38.1
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-10 68.9 122 38.5
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.3e-10 68.9 88 36.4
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 2.3e-10 68.9 88 40.9
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-10 68.6 60 43.3
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 3.0e-10 68.6 50 54.0
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.0e-10 68.6 86 40.7
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.0e-10 68.2 85 37.6
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 5.2e-10 67.8 58 48.3
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 5.2e-10 67.8 89 44.9
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 5.2e-10 67.8 95 40.0
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 5.2e-10 67.8 58 51.7
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-09 66.6 91 36.3
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-09 66.2 58 44.8
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 1.5e-09 66.2 103 34.0
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 2.0e-09 65.9 92 39.1
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-09 65.5 87 36.8
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 2.6e-09 65.5 85 37.6
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-09 65.1 93 37.6
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 4.4e-09 64.7 52 46.2
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.7e-09 64.3 79 36.7
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.7e-09 64.3 79 36.7
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 7.5e-09 63.9 95 35.8
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 7.5e-09 63.9 80 36.2
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.7e-08 62.8 51 47.1
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.7e-08 62.8 80 33.8
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.2e-08 62.4 86 30.2
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 2.2e-08 62.4 89 34.8
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 2.8e-08 62.0 53 49.1
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-08 62.0 51 49.0
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 2.8e-08 62.0 46 56.5
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 3.7e-08 61.6 51 47.1
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 3.7e-08 61.6 51 47.1
FAN08G0703 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.7e-08 61.6 87 42.5
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 4.9e-08 61.2 53 41.5
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 4.9e-08 61.2 92 33.7
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.3e-08 60.8 42 61.9
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 6.3e-08 60.8 54 44.4
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 8.3e-08 60.5 91 30.8
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.1e-07 60.1 49 44.9
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.1e-07 60.1 49 44.9
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.4e-07 59.7 90 28.9
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 2.4e-07 58.9 93 34.4
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.4e-07 58.9 52 51.9


User provided reference genes

Program Settings