Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 0.0e+00 1194.1 613 100.0
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 3.1e-241 838.6 648 68.7
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 6.8e-236 820.8 620 69.8
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 1.2e-232 810.1 654 67.4
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 2.8e-226 788.9 647 64.6
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 1.2e-224 783.5 631 66.4
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 2.9e-223 778.9 624 66.3
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 6.6e-223 777.7 629 66.1
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 3.6e-221 771.9 629 66.0
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 1.8e-220 769.6 641 65.1
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 1.5e-219 766.5 635 65.0
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 5.7e-219 764.6 619 64.9
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 7.5e-219 764.2 618 65.5
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 1.4e-217 760.0 618 65.0
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 1.4e-217 760.0 651 63.3
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 3.2e-217 758.8 634 64.2
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 3.2e-217 758.8 634 64.2
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 5.4e-217 758.1 618 65.2
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.6e-216 756.5 623 65.3
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 6.6e-215 751.1 627 64.6
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 6.6e-215 751.1 638 64.4
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.5e-214 750.0 616 64.8
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.9e-214 749.6 614 65.8
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 3.3e-214 748.8 622 65.0
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 9.5e-214 747.3 620 64.5
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 2.1e-213 746.1 630 64.6
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 3.6e-213 745.3 614 65.3
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.6e-213 745.3 616 65.1
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 4.7e-213 745.0 622 63.0
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 6.2e-213 744.6 619 64.8
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 6.2e-213 744.6 635 64.4
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 1.0e-212 743.8 618 63.9
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.0e-212 743.8 614 65.3
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 3.1e-212 742.3 624 63.8
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 4.0e-212 741.9 623 62.8
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 4.0e-212 741.9 617 65.2
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 6.8e-212 741.1 641 63.3
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 4.4e-211 738.4 619 63.3
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 7.5e-211 737.6 620 64.2
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 1.7e-210 736.5 637 62.3
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.9e-209 733.0 647 60.7
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 2.4e-209 732.6 617 63.5
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 2.4e-209 732.6 629 63.6
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 4.1e-209 731.9 616 63.1
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.0e-207 727.2 647 61.4
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 1.0e-207 727.2 618 62.9
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 3.0e-207 725.7 621 63.1
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 3.9e-207 725.3 640 62.2
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 5.6e-206 721.5 614 64.2
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 2.1e-205 719.5 630 61.7
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.8e-205 719.2 624 62.3
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.8e-205 719.2 641 60.7
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 6.2e-205 718.0 632 62.3
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 8.1e-205 717.6 634 62.6
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 3.1e-204 715.7 613 62.8
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.4e-203 712.2 640 61.6
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 7.5e-203 711.1 617 62.4
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 7.5e-203 711.1 614 63.0
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 7.5e-203 711.1 637 60.6
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 7.5e-203 711.1 680 60.0
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 8.3e-202 707.6 641 60.1
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 1.9e-201 706.4 616 61.5
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.4e-201 706.1 617 62.7
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 2.1e-200 703.0 614 62.2
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 2.7e-200 702.6 616 63.0
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.5e-200 702.2 616 61.4
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 4.6e-200 701.8 627 60.6
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 7.8e-200 701.0 616 61.7
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 1.7e-199 699.9 617 63.0
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 1.9e-198 696.4 620 62.3
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 4.7e-197 691.8 641 60.1
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 1.8e-196 689.9 615 61.0
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 3.1e-196 689.1 616 59.9
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 8.9e-196 687.6 619 60.9
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 2.6e-195 686.0 624 59.9
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 5.8e-195 684.9 638 60.2
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 2.9e-194 682.6 625 59.7
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 3.7e-194 682.2 619 59.6
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 6.4e-194 681.4 507 68.4
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 6.4e-194 681.4 581 62.1
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 8.4e-194 681.0 648 58.2
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.1e-193 680.6 638 59.1
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 7.1e-193 677.9 615 61.1
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 9.2e-193 677.6 638 58.5
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 1.6e-192 676.8 623 59.6
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 6.6e-191 671.4 615 60.8
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 1.1e-190 670.6 621 59.7
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 1.5e-190 670.2 615 59.7
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 2.5e-190 669.5 618 59.4
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 3.3e-190 669.1 624 59.5
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 4.3e-190 668.7 611 59.4
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 4.3e-190 668.7 611 59.4
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 4.3e-190 668.7 615 59.3
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 9.6e-190 667.5 756 51.2
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 1.2e-189 667.2 627 58.2
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 2.1e-189 666.4 634 57.3
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 2.1e-189 666.4 618 60.5
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 1.8e-188 663.3 629 60.1
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 5.2e-188 661.8 633 60.3
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 8.9e-188 661.0 614 59.8
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 4.4e-187 658.7 575 60.3
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 7.6e-187 657.9 582 61.2
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 1.1e-185 654.1 614 57.7
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 2.4e-185 652.9 611 59.1
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 8.7e-183 644.4 645 55.5
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 4.0e-180 635.6 615 58.4
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 2.7e-176 622.9 632 57.1
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 4.6e-176 622.1 484 65.7
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 2.3e-175 619.8 620 56.1
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 3.9e-175 619.0 629 55.8
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.6e-173 613.6 618 56.8
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 5.3e-172 608.6 454 67.6
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 2.2e-162 576.6 551 57.4
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 9.6e-158 561.2 652 48.6
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 9.6e-158 561.2 614 51.3
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 5.9e-155 552.0 502 57.6
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 2.5e-153 546.6 429 65.3
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 2.5e-153 546.6 646 49.7
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 9.3e-153 544.7 397 67.8
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 9.3e-153 544.7 643 48.8
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 3.0e-151 539.7 461 60.7
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 1.5e-150 537.3 449 60.8
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 1.9e-150 537.0 364 73.1
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 3.8e-146 522.7 681 46.1
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 1.0e-143 514.6 616 50.2
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 1.0e-130 471.5 314 72.9
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 2.7e-123 446.8 297 72.1
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 2.9e-122 443.4 310 68.7
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 7.2e-121 438.7 310 69.4
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 1.3e-117 427.9 557 45.2
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 4.2e-113 412.9 296 66.9
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 3.0e-103 380.2 310 66.8
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 1.5e-94 351.3 255 65.9
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 1.5e-94 351.3 255 65.9
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.4e-68 264.2 238 62.2
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 6.2e-56 223.0 426 34.7
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 2.6e-38 164.5 240 46.2
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 2.1e-35 154.8 168 56.5
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 1.5e-33 148.7 177 49.7
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 2.8e-32 144.4 380 31.8
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 5.3e-31 140.2 196 46.9
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 3.9e-26 124.0 373 30.8
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.0e-25 121.7 163 50.3
Oeu014494.1 Olea europaea HOM05D004716 ORTHO05D005646 4.4e-25 120.6 148 52.0
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.8e-23 115.2 87 62.1
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 6.7e-18 96.7 92 57.6
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 2.8e-16 91.3 142 46.5
HanXRQChr10g0277851 Helianthus annuus HOM05D004716 ORTHO05D005646 7.7e-14 83.2 110 50.0
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 2.9e-13 81.3 150 39.3
CSS0021208 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.9e-12 78.6 142 41.5
PGSC0003DMG401024092 Solanum tuberosum HOM05D004716 ORTHO05D005646 1.2e-06 59.3 163 37.4
Psat6g193080 Pisum sativum HOM05D000257 ORTHO05D008537 5.9e-06 57.0 53 54.7


User provided reference genes

Program Settings