Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 1.7e-117 426.0 220 100.0
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 2.8e-107 392.1 200 100.0
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 1.5e-68 263.5 224 70.1
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 6.5e-64 248.1 226 67.3
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 8.5e-64 247.7 225 67.6
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 1.8e-61 240.0 223 64.6
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 5.3e-58 228.4 224 63.8
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 6.5e-56 221.5 221 59.7
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 7.4e-52 208.0 220 57.3
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 1.3e-51 207.2 222 57.7
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 3.1e-50 202.6 223 57.8
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 5.3e-50 201.8 222 58.1
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 2.6e-49 199.5 222 59.0
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 2.9e-48 196.1 225 56.4
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 3.8e-48 195.7 221 57.5
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 4.2e-47 192.2 223 57.0
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 5.5e-47 191.8 223 57.0
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 5.5e-47 191.8 220 55.5
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 1.6e-46 190.3 222 54.5
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 1.4e-45 187.2 224 55.4
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 6.7e-45 184.9 218 55.5
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 6.7e-45 184.9 223 55.2
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 3.3e-44 182.6 224 55.4
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 1.8e-42 176.8 216 52.8
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 4.1e-42 175.6 219 55.3
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 5.3e-42 175.3 220 53.2
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 9.1e-42 174.5 222 50.9
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 2.7e-41 172.9 216 50.9
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 2.7e-41 172.9 220 50.0
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 2.7e-41 172.9 222 52.7
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 5.9e-41 171.8 223 54.3
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 5.9e-41 171.8 218 51.4
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 1.0e-40 171.0 220 51.8
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 1.3e-40 170.6 213 52.1
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 8.5e-40 167.9 219 52.1
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 8.5e-40 167.9 220 52.7
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 1.5e-39 167.2 204 52.9
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 5.5e-39 165.2 222 50.9
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 5.5e-39 165.2 220 48.6
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 5.5e-39 165.2 221 51.1
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 7.2e-39 164.9 222 48.2
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 9.4e-39 164.5 225 50.2
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 9.4e-39 164.5 222 48.2
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 9.4e-39 164.5 222 48.2
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 2.1e-38 163.3 218 51.8
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 2.1e-38 163.3 224 50.0
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 1.0e-37 161.0 221 50.2
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 1.8e-37 160.2 199 51.8
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 1.8e-37 160.2 218 50.5
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 4.0e-37 159.1 195 51.8
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.2e-36 157.5 195 50.8
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 2.6e-36 156.4 218 49.1
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 2.6e-36 156.4 224 50.4
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 3.4e-36 156.0 195 51.8
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 5.7e-36 155.2 222 50.9
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 7.5e-36 154.8 218 50.0
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 1.3e-35 154.1 222 48.2
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 6.3e-35 151.8 212 51.4
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 1.8e-34 150.2 224 46.4
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 9.1e-34 147.9 224 48.2
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 3.5e-33 146.0 231 48.1
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 5.9e-33 145.2 209 46.9
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 7.7e-33 144.8 221 45.7
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 5.0e-32 142.1 221 45.2
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 2.5e-31 139.8 154 56.5
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 5.5e-31 138.7 216 48.6
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 1.2e-30 137.5 185 50.8
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 1.6e-30 137.1 212 47.6
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 2.8e-30 136.3 227 45.4
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 3.6e-30 136.0 220 46.4
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 6.1e-30 135.2 228 47.8
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 1.0e-29 134.4 207 47.8
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 1.8e-29 133.7 197 48.2
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 2.3e-29 133.3 224 48.2
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 5.2e-29 132.1 211 45.5
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 8.8e-29 131.3 222 47.3
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 2.6e-28 129.8 224 44.6
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 9.8e-28 127.9 205 45.4
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 9.8e-28 127.9 181 51.4
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 1.3e-27 127.5 216 44.0
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 2.8e-27 126.3 220 45.5
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 2.8e-27 126.3 218 45.0
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 2.8e-27 126.3 220 42.7
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 2.8e-27 126.3 206 47.1
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 3.7e-27 125.9 225 43.6
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 3.7e-27 125.9 226 45.1
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 6.3e-27 125.2 227 43.2
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 1.0e-24 117.9 192 43.8
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.7e-24 117.1 187 46.0
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.7e-24 117.1 187 46.0
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.3e-24 116.7 223 43.9
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 3.8e-24 115.9 217 40.6
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 5.0e-24 115.5 220 42.3
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 2.5e-23 113.2 224 42.0
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 9.5e-23 111.3 223 44.8
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 9.5e-23 111.3 124 54.0
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 1.2e-22 110.9 220 41.8
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 1.2e-22 110.9 220 41.8
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 1.6e-22 110.5 221 42.5
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 4.7e-22 109.0 219 40.6
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 6.1e-22 108.6 223 40.4
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 8.0e-22 108.2 220 40.9
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 1.0e-21 107.8 219 40.2
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 1.4e-21 107.5 243 39.5
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 4.0e-21 105.9 223 40.4
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 8.9e-21 104.8 220 40.0
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 1.5e-20 104.0 221 41.2
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 4.4e-20 102.4 227 40.5
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 7.5e-20 101.7 226 40.7
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 6.4e-19 98.6 192 38.5
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.8e-18 97.1 223 39.0
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 9.2e-18 94.7 192 37.5
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 9.2e-18 94.7 213 36.2
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 1.6e-17 94.0 232 38.4
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 1.6e-17 94.0 108 54.6
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 3.9e-16 89.4 90 56.7
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 1.2e-14 84.3 100 47.0
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 1.2e-14 84.3 196 39.3
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 2.6e-12 76.6 84 57.1
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 2.6e-12 76.6 84 57.1
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.4e-12 76.3 127 40.2
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 1.7e-11 73.9 221 33.5
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.7e-11 73.9 183 35.0
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 1.6e-09 67.4 158 36.7
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 7.8e-09 65.1 172 35.5
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 1.3e-08 64.3 148 37.2
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 1.3e-08 64.3 220 33.2
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 1.3e-08 64.3 148 37.2
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 1.3e-08 64.3 148 37.2
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 5.0e-08 62.4 113 45.1
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 5.0e-08 62.4 113 45.1
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 5.0e-08 62.4 167 37.1
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 8.6e-08 61.6 113 44.2
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 8.6e-08 61.6 113 44.2
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 3.3e-07 59.7 239 34.7


User provided reference genes

Program Settings