Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 7.5e-161 570.5 290 100.0
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 5.5e-87 325.1 282 62.1
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 2.7e-86 322.8 284 62.3
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.8e-85 320.1 282 61.3
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 5.2e-85 318.5 282 61.7
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 4.8e-83 312.0 282 58.5
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.8e-82 310.1 282 58.2
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 9.1e-82 307.8 282 58.9
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.3e-80 303.9 285 56.5
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 3.8e-80 302.4 281 58.4
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 3.8e-80 302.4 281 58.0
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 5.0e-80 302.0 281 58.4
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 8.5e-80 301.2 282 56.4
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 1.9e-79 300.1 282 58.2
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 7.2e-79 298.1 281 55.5
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 7.2e-79 298.1 280 57.1
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 1.6e-78 297.0 276 58.0
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 2.1e-78 296.6 282 53.9
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.1e-78 296.6 281 56.9
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 6.1e-78 295.0 281 57.7
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 8.0e-78 294.7 281 56.6
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.0e-77 294.3 285 56.8
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 1.0e-77 294.3 281 56.6
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.8e-77 293.5 282 55.7
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.0e-77 292.4 285 56.5
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.0e-77 292.4 285 56.5
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 6.7e-77 291.6 280 55.4
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 8.8e-77 291.2 284 58.5
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.2e-76 290.8 283 56.5
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.5e-76 290.4 282 55.7
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 3.3e-76 289.3 277 54.5
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 5.7e-76 288.5 283 54.1
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.7e-76 288.5 284 55.3
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 5.7e-76 288.5 310 51.0
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 7.5e-76 288.1 277 56.7
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 7.5e-76 288.1 276 55.4
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 7.5e-76 288.1 285 55.4
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 7.5e-76 288.1 282 55.7
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.3e-75 287.3 282 56.0
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.7e-75 287.0 282 55.3
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 2.8e-75 286.2 283 56.5
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 3.7e-75 285.8 278 54.7
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 4.8e-75 285.4 282 52.8
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 6.3e-75 285.0 281 54.4
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 8.2e-75 284.6 283 55.5
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.1e-74 284.3 283 53.7
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.1e-74 284.3 279 55.6
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.1e-74 284.3 276 56.9
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.8e-74 283.5 284 56.3
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 4.1e-74 282.3 279 54.5
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 4.1e-74 282.3 286 55.9
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 4.1e-74 282.3 284 53.9
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 4.1e-74 282.3 280 53.2
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 5.3e-74 282.0 282 53.9
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 5.3e-74 282.0 281 54.4
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 5.3e-74 282.0 196 69.4
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 5.3e-74 282.0 196 69.4
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 7.0e-74 281.6 284 56.0
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 7.0e-74 281.6 280 55.7
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 9.1e-74 281.2 282 53.5
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 9.1e-74 281.2 283 54.1
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 1.2e-73 280.8 277 55.2
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.2e-73 280.8 277 54.9
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 2.0e-73 280.0 276 55.8
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.7e-73 279.6 284 53.2
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.5e-73 279.3 281 54.1
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 3.5e-73 279.3 281 53.7
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 5.9e-73 278.5 282 53.2
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 7.7e-73 278.1 275 53.8
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 1.0e-72 277.7 282 53.5
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.7e-72 276.9 279 54.1
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 1.7e-72 276.9 279 54.1
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 6.5e-72 275.0 194 67.0
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 1.1e-71 274.2 276 55.4
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.5e-71 273.9 279 53.4
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.5e-71 273.1 283 53.4
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 3.2e-71 272.7 285 53.0
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.6e-70 270.4 284 53.9
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 1.6e-70 270.4 194 66.0
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.6e-70 270.4 281 53.4
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 3.6e-70 269.2 282 50.7
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 6.1e-70 268.5 283 51.9
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 6.1e-70 268.5 285 51.6
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 8.0e-70 268.1 283 52.3
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 8.0e-70 268.1 254 57.1
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.0e-69 267.7 285 51.6
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.0e-69 267.7 259 55.2
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.0e-69 266.2 285 50.9
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 4.0e-69 265.8 281 51.6
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 8.8e-69 264.6 309 49.2
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 4.4e-68 262.3 189 68.3
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 9.8e-68 261.2 282 49.6
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.7e-67 260.4 308 49.7
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 4.8e-67 258.8 276 52.9
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 2.4e-66 256.5 281 49.8
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 2.4e-66 256.5 281 49.8
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 9.1e-66 254.6 281 49.5
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 9.1e-66 254.6 244 56.1
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 2.0e-65 253.4 281 49.1
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 2.0e-65 253.4 281 49.1
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.5e-65 252.7 278 49.3
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 5.9e-65 251.9 281 49.5
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.2e-64 250.0 272 49.6
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.9e-64 249.6 279 50.2
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 3.8e-64 249.2 198 59.6
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 8.5e-64 248.1 279 50.5
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.1e-63 247.7 281 48.0
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 1.9e-63 246.9 270 51.5
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 2.5e-63 246.5 280 48.9
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.2e-63 246.1 284 47.5
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 5.5e-63 245.4 281 49.1
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 5.5e-63 245.4 281 49.1
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 7.2e-63 245.0 280 51.4
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 9.5e-63 244.6 285 48.1
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 9.5e-63 244.6 279 49.5
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 9.5e-63 244.6 281 47.3
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 1.6e-62 243.8 281 48.8
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 1.6e-62 243.8 281 48.8
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 1.6e-62 243.8 281 48.8
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 4.7e-62 242.3 194 61.9
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.0e-61 241.1 282 47.5
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 6.8e-61 238.4 190 62.1
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 2.6e-60 236.5 157 68.2
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 3.1e-58 229.6 268 48.1
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 2.0e-57 226.9 161 66.5
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 7.8e-57 224.9 209 54.5
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.3e-56 224.2 285 45.3
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.3e-56 224.2 285 45.3
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 4.7e-54 215.7 212 56.6
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 8.0e-54 214.9 276 46.0
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.0e-54 214.9 282 45.0
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 8.9e-53 211.5 208 55.3
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 4.4e-52 209.1 263 42.6
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 5.7e-52 208.8 173 62.4
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 3.2e-50 203.0 205 51.2
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 1.9e-47 193.7 231 45.9
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 9.5e-47 191.4 298 41.6
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 1.5e-44 184.1 279 38.0
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 1.4e-42 177.6 274 38.0
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 3.3e-39 166.4 268 35.1
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 2.1e-38 163.7 210 40.5
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.7e-38 162.5 285 40.0
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.1e-37 161.4 124 64.5
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.3e-37 160.2 120 63.3
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 3.1e-37 159.8 121 59.5
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 6.8e-37 158.7 121 61.2
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.2e-34 149.8 202 39.1
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.0e-32 144.8 124 58.1
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 4.4e-28 129.4 149 41.6
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 2.4e-21 107.1 148 44.6
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 8.9e-21 105.1 74 70.3
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-19 101.3 142 45.1
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.3e-19 101.3 180 30.6
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 9.3e-18 95.1 81 60.5
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.3e-15 86.3 209 31.6
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 4.3e-15 86.3 209 31.6
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 4.8e-14 82.8 71 56.3
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 4.0e-13 79.7 75 50.7
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 3.4e-12 76.6 47 74.5
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.1e-10 71.6 144 39.6


User provided reference genes

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