Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0309 Salvia bowleyana HOM05D000015 ORTHO05D023115 3.0e-48 194.9 100 100.0
SalBow5G4087 Salvia bowleyana HOM05D002553 ORTHO05D002767 1.6e-25 119.4 101 67.3
SalBow8G0993 Salvia bowleyana HOM05D000015 ORTHO05D023115 7.3e-23 110.5 123 54.5
Migut.B00093 Erythranthe guttata HOM05D000015 ORTHO05D000249 1.9e-15 85.9 91 58.2
CSS0030756 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D000249 7.4e-15 84.0 67 68.7
MSTRG.20003 Avicennia marina HOM05D000015 ORTHO05D000249 2.1e-14 82.4 91 56.0
SGA_v2.0_scaffold58G20384 Striga asiatica HOM05D000015 ORTHO05D000249 3.7e-14 81.6 91 54.9
Duzib132G0009 Durio zibethinus HOM05D000015 ORTHO05D000249 6.2e-14 80.9 91 54.9
TPR.G39244 Trifolium pratense HOM05D000015 ORTHO05D000249 8.1e-14 80.5 91 53.8
vmacro17362 Vaccinium macrocarpon HOM05D000015 ORTHO05D000249 8.1e-14 80.5 91 54.9
Migut.N01309 Erythranthe guttata HOM05D000015 ORTHO05D000249 1.1e-13 80.1 91 53.8
Peaxi162Scf00362g00088 Petunia axillaris HOM05D000015 ORTHO05D000249 1.8e-13 79.3 91 53.8
Actinidia23599 Actinidia chinensis HOM05D000015 ORTHO05D000249 4.0e-13 78.2 90 52.2
CSS0049704 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D000249 4.0e-13 78.2 91 52.7
Duzib052G0613 Durio zibethinus HOM05D000015 ORTHO05D000249 4.0e-13 78.2 91 53.8
Psat7g175360 Pisum sativum HOM05D000015 ORTHO05D000249 4.0e-13 78.2 91 51.6
Rhsim05G0061100 Rhododendron simsii HOM05D000015 ORTHO05D000249 4.0e-13 78.2 91 52.7
Actinidia31243 Actinidia chinensis HOM05D000015 ORTHO05D000249 5.3e-13 77.8 90 52.2
CSS0007690 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D000249 5.3e-13 77.8 90 53.3
THA.LOC104807364 Tarenaya hassleriana HOM05D000015 ORTHO05D000249 5.3e-13 77.8 91 52.7
MSTRG.16897 Avicennia marina HOM05D000015 ORTHO05D000249 6.9e-13 77.4 91 50.5
CAN.G588.58 Capsicum annuum HOM05D000015 ORTHO05D000249 6.9e-13 77.4 91 52.7
COL.COLO4_17313 Corchorus olitorius HOM05D000015 ORTHO05D000249 6.9e-13 77.4 91 52.7
Nitab4.5_0005837g0030 Nicotiana tabacum HOM05D000015 ORTHO05D000249 6.9e-13 77.4 91 52.7
Oeu008324.1 Olea europaea HOM05D000015 ORTHO05D000249 6.9e-13 77.4 90 54.4
Oeu055658.1 Olea europaea HOM05D000015 ORTHO05D000249 6.9e-13 77.4 90 54.4
Dinv14091 Davidia involucrata HOM05D000015 ORTHO05D000249 9.0e-13 77.0 91 50.5
Thecc.02G062100 Theobroma cacao HOM05D000015 ORTHO05D000249 9.0e-13 77.0 91 52.7
TAR376G1037 Trochodendron aralioides HOM05D000015 ORTHO05D000249 9.0e-13 77.0 91 50.5
unitig_60.g25796 Utricularia gibba HOM05D000015 ORTHO05D000249 9.0e-13 77.0 90 51.1
HanXRQChr12g0386371 Helianthus annuus HOM05D000015 ORTHO05D000249 1.2e-12 76.6 90 53.3
Lsat_1_v5_gn_8_123961 Lactuca sativa HOM05D000015 ORTHO05D000249 1.2e-12 76.6 90 53.3
Medtr4g073540 Medicago truncatula HOM05D000015 ORTHO05D000249 1.2e-12 76.6 90 51.1
Solyc01g111400.4 Solanum lycopersicum HOM05D000015 ORTHO05D000249 1.5e-12 76.3 91 51.6
Sopen01g053460 Solanum pennellii HOM05D000015 ORTHO05D000249 1.5e-12 76.3 91 51.6
PGSC0003DMG400006198 Solanum tuberosum HOM05D000015 ORTHO05D000249 1.5e-12 76.3 91 51.6
Ca_19058_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000249 2.0e-12 75.9 90 52.2
DCAR_003161 Daucus carota HOM05D000015 ORTHO05D000249 2.0e-12 75.9 90 52.2
Glyma.04G004200 Glycine max HOM05D000015 ORTHO05D000249 2.0e-12 75.9 91 50.5
Hma1.2p1_0163F.1_g072330 Hydrangea macrophylla HOM05D000015 ORTHO05D000249 3.4e-12 75.1 90 52.2
Nitab4.5_0001891g0020 Nicotiana tabacum HOM05D000015 ORTHO05D000249 3.4e-12 75.1 91 50.5
Sc08g0003020 Simmondsia chinensis HOM05D000015 ORTHO05D000249 3.4e-12 75.1 90 51.1
VMungo1127G0109 Vigna mungo HOM05D000015 ORTHO05D000249 3.4e-12 75.1 90 51.1
Nn6g32020 Nelumbo nucifera HOM05D000015 ORTHO05D000249 4.5e-12 74.7 91 50.5
Phvul.011G034700 Phaseolus vulgaris HOM05D000015 ORTHO05D000249 4.5e-12 74.7 90 51.1
TAR628G0565 Trochodendron aralioides HOM05D000015 ORTHO05D000249 4.5e-12 74.7 92 50.0
Cpa.g.sc37.154 Carica papaya HOM05D000015 ORTHO05D000249 5.8e-12 74.3 90 51.1
Cfa005225 Carpinus fangiana HOM05D000015 ORTHO05D000249 7.6e-12 73.9 90 52.2
Haze_02157 Corylus avellana HOM05D000015 ORTHO05D000249 7.6e-12 73.9 90 52.2
Phvul.009G120000 Phaseolus vulgaris HOM05D000015 ORTHO05D000249 1.0e-11 73.6 90 50.0
VMungo1309G0244 Vigna mungo HOM05D000015 ORTHO05D000249 1.0e-11 73.6 90 50.0
Glyma.12G031800 Glycine max HOM05D000015 ORTHO05D000249 1.3e-11 73.2 90 50.0
CDE02G4604 Ceratophyllum demersum HOM05D000015 ORTHO05D000249 1.7e-11 72.8 90 47.8
Lj3g0021921 Lotus japonicus HOM05D000015 ORTHO05D000249 1.7e-11 72.8 90 48.9
CARHR106920 Cardamine hirsuta HOM05D000015 ORTHO05D000249 2.2e-11 72.4 91 48.4
Nn5g30745 Nelumbo nucifera HOM05D000015 ORTHO05D000249 2.2e-11 72.4 91 49.5
GSVIVG01024042001 Vitis vinifera HOM05D000015 ORTHO05D000249 2.2e-11 72.4 91 47.3
MBI09_g14150_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D000249 2.9e-11 72.0 97 46.4
PSO541G0045 Papaver somniferum HOM05D000015 ORTHO05D000249 2.9e-11 72.0 91 47.3
Cc02_g16300 Coffea canephora HOM05D000015 ORTHO05D000249 3.8e-11 71.6 90 48.9
Glyma.11G106800 Glycine max HOM05D000015 ORTHO05D000249 3.8e-11 71.6 90 48.9
HPP92_025486 Vanilla planifolia HOM05D000015 ORTHO05D000249 3.8e-11 71.6 91 46.2
Os03g0242900 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D000249 4.9e-11 71.2 91 45.1
SalBow7G3450 Salvia bowleyana HOM05D000015 ORTHO05D360766 4.9e-11 71.2 88 52.3
Sed0009246 Sechium edule HOM05D000015 ORTHO05D000249 4.9e-11 71.2 90 50.0
Atru.chr5.3296 Acer truncatum HOM05D000015 ORTHO05D000249 6.5e-11 70.9 90 48.9
AUR62010056 Chenopodium quinoa HOM05D000015 ORTHO05D000249 6.5e-11 70.9 90 46.7
ECA233G4276 Erigeron canadensis HOM05D000015 ORTHO05D000249 6.5e-11 70.9 90 48.9
PGR142G2508 Punica granatum HOM05D000015 ORTHO05D000249 6.5e-11 70.9 90 51.1
Sp3g30070 Schrenkiella parvula HOM05D000015 ORTHO05D000249 6.5e-11 70.9 90 50.0
Aa31LG2G15500 Aethionema arabicum HOM05D000015 ORTHO05D000249 8.4e-11 70.5 90 48.9
Carub.0003s3044 Capsella rubella HOM05D000015 ORTHO05D000249 1.1e-10 70.1 90 47.8
CiPaw.05G080600 Carya illinoinensis HOM05D000015 ORTHO05D000249 1.1e-10 70.1 90 50.0
Ciclev10027859m.g Citrus clementina HOM05D000015 ORTHO05D000249 1.1e-10 70.1 90 48.9
FAN20G0146 Fragaria x ananassa HOM05D000015 ORTHO05D000249 1.1e-10 70.1 90 48.9
Zm00001eb010360 Zea mays HOM05D000015 ORTHO05D000249 1.1e-10 70.1 91 44.0
AL3G49370 Arabidopsis lyrata HOM05D000015 ORTHO05D000249 1.4e-10 69.7 90 47.8
arahy.Tifrunner.gnm1.ann1.KLZ79N Arachis hypogaea HOM05D000015 ORTHO05D000249 1.4e-10 69.7 90 47.8
arahy.Tifrunner.gnm1.ann1.V9TZWK Arachis hypogaea HOM05D000015 ORTHO05D000249 1.4e-10 69.7 90 47.8
AUR62013048 Chenopodium quinoa HOM05D000015 ORTHO05D000249 1.4e-10 69.7 90 45.6
FvH4_2g01410 Fragaria vesca HOM05D000015 ORTHO05D000249 1.4e-10 69.7 90 47.8
FAN15G3093 Fragaria x ananassa HOM05D000015 ORTHO05D000249 1.4e-10 69.7 90 47.8
FAN24G1540 Fragaria x ananassa HOM05D000015 ORTHO05D000249 1.4e-10 69.7 90 47.8
Manes.04G074500 Manihot esculenta HOM05D000015 ORTHO05D000249 1.4e-10 69.7 90 48.9
Sabra04G0115800 Salix brachista HOM05D000015 ORTHO05D000249 1.4e-10 69.7 90 47.8
TWI75G0234 Tripterygium wilfordii HOM05D000015 ORTHO05D000249 1.4e-10 69.7 90 48.9
CANSAT25G0962 Cannabis sativa HOM05D000015 ORTHO05D000249 1.9e-10 69.3 90 47.8
Potri.004G173900 Populus trichocarpa HOM05D000015 ORTHO05D000249 1.9e-10 69.3 90 46.7
Ah.01g008540 Amaranthus hybridus HOM05D000015 ORTHO05D000249 2.5e-10 68.9 91 46.2
EL10Ac9g21396 Beta vulgaris HOM05D000015 ORTHO05D000249 2.5e-10 68.9 91 46.2
ClCG02G011830 Citrullus lanatus HOM05D000015 ORTHO05D000249 2.5e-10 68.9 90 48.9
Prupe.8G164000 Prunus persica HOM05D000015 ORTHO05D000249 2.5e-10 68.9 90 48.9
BcaNung02362 Brassica carinata HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 47.8
A03p63200 Brassica napus HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 47.8
C07p60840 Brassica napus HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 47.8
BolC7t46512H Brassica oleracea HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 47.8
BraA03t15397Z Brassica rapa HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 47.8
MELO3C020810.2 Cucumis melo HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 46.7
Thhalv10026999m.g Eutrema salsugineum HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 47.8
MD05G1120100 Malus domestica HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 47.8
QL11p049963 Quercus lobata HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 47.8
RcHm_v2.0_Chr6g0244021 Rosa chinensis HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 47.8
RcHm_v2.0_Chr6g0252361 Rosa chinensis HOM05D000015 ORTHO05D000249 3.2e-10 68.6 90 47.8
CARHR243260 Cardamine hirsuta HOM05D000015 ORTHO05D000249 4.2e-10 68.2 90 46.7
SalBow1G1790 Salvia bowleyana HOM05D008940 ORTHO05D023115 4.2e-10 68.2 90 47.8
Sp7g32740 Schrenkiella parvula HOM05D000015 ORTHO05D000249 5.5e-10 67.8 90 45.6
Aqoxy6G02262 Aquilegia oxysepala HOM05D000015 ORTHO05D000249 7.1e-10 67.4 90 46.7
CsaV3_2G015990 Cucumis sativus L. HOM05D000015 ORTHO05D000249 7.1e-10 67.4 90 45.6
Potri.009G133400 Populus trichocarpa HOM05D000015 ORTHO05D000249 7.1e-10 67.4 90 47.8
SalBow3G4543 Salvia bowleyana HOM05D000015 ORTHO05D353986 1.2e-09 66.6 77 50.6
AL7G16240 Arabidopsis lyrata HOM05D000015 ORTHO05D000249 1.6e-09 66.2 90 46.7
AT4G34980 Arabidopsis thaliana HOM05D000015 ORTHO05D000249 1.6e-09 66.2 90 46.7
Carub.0007s0533 Capsella rubella HOM05D000015 ORTHO05D000249 1.6e-09 66.2 90 46.7
Sabra09G0103500 Salix brachista HOM05D000015 ORTHO05D000249 1.6e-09 66.2 90 46.7
MD10G1123500 Malus domestica HOM05D000015 ORTHO05D000249 2.7e-09 65.5 90 45.6
Eucgr.I01402 Eucalyptus grandis HOM05D000015 ORTHO05D000249 6.0e-09 64.3 90 45.6
Peaxi162Scf00365g00087 Petunia axillaris HOM05D000015 ORTHO05D000249 6.0e-09 64.3 77 46.8
SalBow1G5529 Salvia bowleyana HOM05D000015 ORTHO05D000249 6.0e-09 64.3 90 50.0
Gohir.A01G166966 Gossypium hirsutum HOM05D000015 ORTHO05D019462 1.3e-08 63.2 87 47.1
SalBow7G1542 Salvia bowleyana HOM05D000015 ORTHO05D023115 1.1e-07 60.1 88 50.0
TPR.G12719 Trifolium pratense HOM05D000015 ORTHO05D000249 1.9e-07 59.3 91 39.6
Medtr4g125180 Medicago truncatula HOM05D000015 ORTHO05D000249 2.5e-07 58.9 91 40.7
Phvul.003G130300 Phaseolus vulgaris HOM05D000015 ORTHO05D000249 4.3e-07 58.2 91 40.7
VMungo1215G0616 Vigna mungo HOM05D000015 ORTHO05D000249 5.7e-07 57.8 91 40.7
SalBow3G0518 Salvia bowleyana HOM05D000015 ORTHO05D360923 7.4e-07 57.4 71 46.5
vmacro17206 Vaccinium macrocarpon HOM05D000015 ORTHO05D000249 7.4e-07 57.4 101 36.6
Psat4g018360 Pisum sativum HOM05D000015 ORTHO05D000249 1.3e-06 56.6 91 38.5
Glyma.17G048700 Glycine max HOM05D000015 ORTHO05D000249 1.6e-06 56.2 91 39.6
vmacro17135 Vaccinium macrocarpon HOM05D000015 ORTHO05D000249 1.6e-06 56.2 91 38.5
EL10Ac8g19050 Beta vulgaris HOM05D000015 ORTHO05D000249 2.1e-06 55.8 105 35.2
CDE05G0174 Ceratophyllum demersum HOM05D000015 ORTHO05D000249 2.1e-06 55.8 91 39.6
CDE06G1711 Ceratophyllum demersum HOM05D000015 ORTHO05D000249 2.1e-06 55.8 105 39.0
CDE11G1097 Ceratophyllum demersum HOM05D000015 ORTHO05D000249 2.1e-06 55.8 91 38.5
Glyma.13G110800 Glycine max HOM05D000015 ORTHO05D000249 2.1e-06 55.8 91 39.6
SEGI_17710 Sequoiadendron giganteum HOM05D000015 ORTHO05D000249 2.1e-06 55.8 90 40.0
THA.LOC104826594 Tarenaya hassleriana HOM05D000015 ORTHO05D000249 2.1e-06 55.8 105 37.1
SalBow3G3453 Salvia bowleyana HOM05D000015 ORTHO05D000249 2.8e-06 55.5 91 44.0
Hund08817 Selenicereus undatus HOM05D000015 ORTHO05D000249 2.8e-06 55.5 105 36.2
Sc08g0008920 Simmondsia chinensis HOM05D000015 ORTHO05D000249 2.8e-06 55.5 91 36.3
TAR633G2570 Trochodendron aralioides HOM05D000015 ORTHO05D000249 2.8e-06 55.5 91 38.5
DCAR_011944 Daucus carota HOM05D000015 ORTHO05D000249 3.7e-06 55.1 90 38.9
Oeu035620.1 Olea europaea HOM05D000015 ORTHO05D000249 3.7e-06 55.1 90 38.9
Oeu035621.1 Olea europaea HOM05D000015 ORTHO05D000249 3.7e-06 55.1 90 38.9
QL11p055235 Quercus lobata HOM05D000015 ORTHO05D000249 3.7e-06 55.1 91 39.6
Cc06_g12230 Coffea canephora HOM05D000015 ORTHO05D000249 4.8e-06 54.7 105 36.2
MELO3C015526.2 Cucumis melo HOM05D000015 ORTHO05D000249 4.8e-06 54.7 105 35.2
CsaV3_1G041110 Cucumis sativus L. HOM05D000015 ORTHO05D000249 4.8e-06 54.7 105 35.2
MBI19_g09831_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D000249 4.8e-06 54.7 91 38.5
QL11p000993 Quercus lobata HOM05D000015 ORTHO05D000249 4.8e-06 54.7 105 36.2
Rhsim08G0094400 Rhododendron simsii HOM05D000015 ORTHO05D000249 4.8e-06 54.7 90 40.0
THA.LOC104815339 Tarenaya hassleriana HOM05D000015 ORTHO05D000249 4.8e-06 54.7 105 36.2
SalBow6G0589 Salvia bowleyana HOM05D000015 ORTHO05D000249 6.2e-06 54.3 90 41.1
Ah.09g229310 Amaranthus hybridus HOM05D000015 ORTHO05D000249 8.2e-06 53.9 105 35.2
Aqoxy7G04101 Aquilegia oxysepala HOM05D000015 ORTHO05D000249 8.2e-06 53.9 90 37.8
Cpa.g.sc28.26 Carica papaya HOM05D000015 ORTHO05D000249 8.2e-06 53.9 105 34.3
AUR62009951 Chenopodium quinoa HOM05D000015 ORTHO05D000249 8.2e-06 53.9 90 37.8
PSO135G0591 Papaver somniferum HOM05D000015 ORTHO05D000249 8.2e-06 53.9 105 37.1
PGR119G2333 Punica granatum HOM05D000015 ORTHO05D000249 8.2e-06 53.9 90 41.1
SEGI_15903 Sequoiadendron giganteum HOM05D000015 ORTHO05D000249 8.2e-06 53.9 107 35.5


User provided reference genes

Program Settings