Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 9.8e-192 673.3 345 100.0
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 2.8e-170 602.1 345 91.9
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 1.6e-138 496.5 349 74.5
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 8.1e-138 494.2 345 75.4
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 1.3e-127 460.3 345 71.9
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 3.9e-124 448.7 341 69.8
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 1.1e-123 447.2 341 69.5
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 1.1e-123 447.2 347 68.3
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 1.5e-123 446.8 339 70.2
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 5.7e-123 444.9 345 68.7
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 2.8e-122 442.6 338 67.5
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.4e-121 440.3 339 67.3
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 4.1e-121 438.7 339 68.7
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 6.9e-121 438.0 349 66.5
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 2.0e-120 436.4 341 66.6
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 2.6e-120 436.0 341 66.9
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 7.7e-120 434.5 346 66.8
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 7.7e-120 434.5 338 68.0
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 6.1e-117 424.9 347 64.3
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 4.4e-115 418.7 341 63.6
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 1.3e-114 417.2 345 63.2
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 2.2e-114 416.4 316 69.9
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 4.8e-114 415.2 343 62.7
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 6.3e-114 414.8 340 62.9
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 6.3e-114 414.8 384 59.6
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 4.1e-113 412.1 340 62.4
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 4.1e-113 412.1 349 63.0
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 5.3e-113 411.8 346 62.1
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 6.9e-113 411.4 334 63.8
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 9.1e-113 411.0 349 62.8
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 7.7e-112 407.9 337 63.8
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 1.0e-111 407.5 331 65.0
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 2.9e-111 406.0 334 64.1
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 1.1e-110 404.1 345 61.4
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 2.5e-110 402.9 339 61.7
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 3.2e-110 402.5 360 60.8
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 7.9e-109 397.9 343 59.5
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 1.8e-108 396.7 350 60.0
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 3.0e-108 396.0 349 61.0
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 7.4e-107 391.3 337 60.5
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 3.7e-106 389.0 337 59.3
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 4.8e-106 388.7 345 58.8
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 7.0e-105 384.8 336 60.1
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 1.2e-104 384.0 339 61.9
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 2.0e-104 383.3 379 55.9
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 2.0e-104 383.3 345 58.6
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 5.9e-104 381.7 282 68.8
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 7.7e-104 381.3 310 64.8
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 7.7e-104 381.3 337 62.3
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 2.2e-103 379.8 336 59.2
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 5.0e-103 378.6 337 59.3
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 6.5e-103 378.3 337 61.1
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 9.4e-102 374.4 343 57.4
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 2.7e-101 372.9 339 59.9
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 6.1e-101 371.7 340 57.4
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 1.0e-100 370.9 345 56.8
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 1.4e-100 370.5 339 57.2
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.8e-100 370.2 350 58.0
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 6.7e-100 368.2 340 57.4
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 8.8e-100 367.9 339 58.4
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 8.8e-100 367.9 335 60.6
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.0e-99 366.7 340 57.1
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 4.4e-99 365.5 348 56.6
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 5.7e-99 365.2 338 55.9
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 7.5e-99 364.8 336 56.5
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 1.7e-98 363.6 337 55.8
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 2.2e-98 363.2 336 54.8
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 2.8e-98 362.8 339 55.8
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 4.8e-98 362.1 339 55.5
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 6.3e-98 361.7 339 55.5
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 6.3e-98 361.7 339 56.9
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 1.4e-97 360.5 336 55.1
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 1.2e-96 357.5 283 65.4
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 2.7e-96 356.3 340 55.3
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 1.0e-95 354.4 339 54.3
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 1.0e-95 354.4 340 53.8
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 3.8e-95 352.4 345 54.8
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 3.8e-95 352.4 346 57.5
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 1.1e-94 350.9 241 71.4
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 7.2e-94 348.2 354 54.8
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 9.4e-94 347.8 341 56.6
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.6e-93 345.9 307 60.9
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 4.7e-93 345.5 336 53.3
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 1.0e-92 344.4 338 53.8
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 1.0e-92 344.4 337 54.9
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 3.0e-92 342.8 340 55.3
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 9.8e-91 337.8 337 54.6
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 1.4e-89 334.0 327 53.2
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 2.4e-89 333.2 338 53.3
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 5.4e-89 332.0 337 51.3
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 2.2e-87 326.6 279 59.5
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 2.9e-87 326.2 342 51.8
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 6.5e-87 325.1 336 55.4
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 8.5e-87 324.7 337 52.8
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 1.9e-86 323.6 335 53.4
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 7.2e-86 321.6 337 54.6
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 9.5e-86 321.2 341 53.1
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 1.6e-85 320.5 344 51.5
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 2.8e-85 319.7 336 50.3
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 2.8e-85 319.7 336 50.3
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 6.1e-85 318.5 338 50.0
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 6.1e-85 318.5 338 50.0
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 1.5e-83 313.9 348 49.7
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 2.0e-83 313.5 337 51.9
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 2.6e-83 313.2 337 50.1
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 9.8e-83 311.2 339 51.0
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 7.0e-81 305.1 231 69.7
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 1.5e-78 297.4 344 48.5
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 2.5e-78 296.6 334 49.4
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 4.3e-78 295.8 337 48.4
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 1.6e-77 293.9 334 50.9
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 2.1e-77 293.5 337 49.9
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 3.6e-77 292.7 344 48.0
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 4.7e-77 292.4 335 49.3
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 2.3e-76 290.0 347 47.6
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 3.4e-75 286.2 332 47.9
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 3.7e-74 282.7 348 46.6
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 3.7e-74 282.7 338 47.0
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 6.4e-74 282.0 337 45.4
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 2.4e-73 280.0 347 46.4
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 2.7e-72 276.6 338 47.0
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 2.5e-70 270.0 284 53.9
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 5.6e-70 268.9 347 44.1
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 7.3e-70 268.5 202 64.4
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.7e-66 257.3 334 47.3
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 2.9e-66 256.5 341 46.0
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 4.1e-65 252.7 335 46.3
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 7.0e-65 251.9 336 44.6
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 1.7e-63 247.3 303 52.1
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 2.1e-56 223.8 216 52.8
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.5e-54 217.6 335 40.6
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.2e-53 214.5 342 38.9
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 2.4e-52 210.3 313 44.7
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 4.0e-52 209.5 338 38.5
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 3.8e-50 203.0 248 44.8
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 1.3e-47 194.5 193 52.3
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 2.3e-47 193.7 334 36.2
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 3.0e-47 193.4 152 61.8
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.9e-38 164.1 337 35.3
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 4.8e-37 159.5 115 67.0
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 6.9e-36 155.6 112 70.5
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 2.1e-32 144.1 234 39.7
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 1.8e-28 131.0 157 46.5
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 5.8e-27 125.9 142 56.3
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 9.3e-25 118.6 179 45.3
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 1.8e-23 114.4 124 54.8
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.0e-23 113.6 78 69.2
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 1.8e-20 104.4 119 54.6
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 7.6e-19 99.0 111 53.2
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 4.9e-18 96.3 255 33.3
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 6.5e-18 95.9 160 43.8
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-17 94.7 199 33.7
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 6.7e-15 85.9 219 32.4
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 4.1e-12 76.6 52 65.4
PRCOL_00000454 Prasinoderma coloniale HOM05D004681 ORTHO05D005541 9.0e-12 75.5 255 28.2
Cre03.g177900 Chlamydomonas reinhardtii HOM05D004681 ORTHO05D005541 3.2e-09 67.0 317 25.6
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 7.2e-09 65.9 185 29.7
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 9.3e-09 65.5 238 28.2


User provided reference genes

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