Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.4e-189 664.8 333 100.0
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.1e-129 464.9 333 71.5
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.9e-113 412.1 350 65.7
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.0e-109 399.8 343 64.1
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.1e-67 261.2 358 45.8
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 6.8e-65 251.9 354 46.6
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 2.1e-58 230.3 382 41.1
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 2.0e-56 223.8 350 44.6
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 6.2e-50 202.2 300 42.7
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 4.4e-48 196.1 296 41.9
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 1.3e-47 194.5 227 48.9
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 2.2e-47 193.7 367 39.2
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 3.7e-47 193.0 249 46.2
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 3.7e-47 193.0 321 41.7
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 3.7e-47 193.0 233 49.4
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.4e-46 191.0 259 45.6
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 2.4e-46 190.3 325 42.5
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.0e-44 184.9 327 41.3
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.3e-44 184.5 230 47.4
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 3.0e-44 183.3 274 43.8
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 3.9e-44 183.0 293 42.7
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 3.9e-44 183.0 287 42.5
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 5.1e-44 182.6 334 38.9
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 6.6e-44 182.2 235 45.1
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 1.1e-43 181.4 283 43.1
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.1e-43 181.4 283 43.1
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 2.5e-43 180.3 228 48.2
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.5e-43 180.3 326 39.3
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 3.3e-43 179.9 229 44.5
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 3.3e-43 179.9 231 45.5
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 4.3e-43 179.5 321 37.7
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 5.6e-43 179.1 256 42.2
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 5.6e-43 179.1 336 38.4
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 7.3e-43 178.7 255 42.7
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 7.3e-43 178.7 255 42.7
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 7.3e-43 178.7 229 45.0
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 9.6e-43 178.3 220 47.7
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 1.2e-42 177.9 227 45.8
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.2e-42 177.9 362 37.3
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.6e-42 177.6 232 44.4
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 2.8e-42 176.8 244 43.0
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 3.6e-42 176.4 305 39.0
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 4.7e-42 176.0 231 45.5
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 6.2e-42 175.6 270 41.1
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.8e-41 174.1 272 41.9
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.8e-41 174.1 221 45.7
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 1.8e-41 174.1 237 43.0
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 4.0e-41 172.9 267 43.1
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 4.0e-41 172.9 238 44.5
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 6.8e-41 172.2 231 44.6
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 2.0e-40 170.6 230 45.2
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 2.0e-40 170.6 229 45.9
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 3.4e-40 169.9 351 36.8
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 3.4e-40 169.9 344 37.2
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 4.4e-40 169.5 238 43.7
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 9.9e-40 168.3 308 38.3
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 9.9e-40 168.3 296 39.2
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 1.3e-39 167.9 240 42.5
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.2e-39 167.2 237 43.0
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 2.9e-39 166.8 277 40.1
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 3.8e-39 166.4 240 42.5
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 6.4e-39 165.6 190 49.5
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 6.4e-39 165.6 229 44.5
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.4e-38 164.5 224 44.6
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.4e-38 163.7 224 45.1
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 3.2e-38 163.3 225 44.4
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 3.2e-38 163.3 247 41.3
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 3.2e-38 163.3 247 41.3
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 4.2e-38 162.9 273 39.6
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 5.4e-38 162.5 247 40.9
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 5.4e-38 162.5 276 41.3
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 7.1e-38 162.2 228 42.1
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 7.1e-38 162.2 249 41.0
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 9.3e-38 161.8 247 40.5
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 9.3e-38 161.8 247 40.5
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 9.3e-38 161.8 212 46.7
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 9.3e-38 161.8 247 40.5
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.6e-37 161.0 231 42.4
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.1e-37 160.6 231 42.9
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 3.5e-37 159.8 231 42.0
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.0e-36 158.3 230 42.2
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.0e-36 158.3 220 45.9
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.7e-36 157.5 265 38.9
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 2.5e-35 153.7 243 39.1
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 3.3e-35 153.3 229 41.5
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 4.3e-35 152.9 229 41.9
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 5.6e-35 152.5 229 42.4
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 1.3e-34 151.4 226 42.0
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 4.8e-34 149.4 222 43.2
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 3.1e-33 146.7 219 42.0
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 5.3e-33 146.0 208 42.8
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 5.8e-32 142.5 211 42.2
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 7.6e-32 142.1 211 42.2
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 2.2e-31 140.6 214 43.0
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.8e-31 139.8 216 40.3
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 6.4e-31 139.0 193 43.5
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 2.4e-30 137.1 215 38.1
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.2e-30 136.7 211 39.3
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 5.4e-30 136.0 227 41.0
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 9.3e-30 135.2 216 39.8
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.6e-29 132.9 213 38.0
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.3e-26 124.8 201 40.3
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 8.1e-26 122.1 191 37.7
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.4e-25 121.3 213 35.2
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 3.1e-25 120.2 216 36.1
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.0e-25 119.8 238 37.0
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 5.3e-25 119.4 257 32.7
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.2e-24 118.2 252 33.3
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.5e-24 117.9 218 35.8
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-24 117.9 238 36.6
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 2.0e-24 117.5 162 41.4
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 3.4e-24 116.7 310 33.2
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 3.4e-24 116.7 158 44.3
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.7e-23 114.4 224 37.1
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 2.2e-23 114.0 218 34.9
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 3.8e-23 113.2 290 34.1
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 8.4e-23 112.1 310 32.3
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 8.4e-23 112.1 230 35.2
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.4e-22 110.5 203 38.4
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 5.4e-22 109.4 101 51.5
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 9.3e-22 108.6 128 42.2
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 4.6e-21 106.3 201 36.3
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.8e-20 104.4 248 34.7
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.8e-20 104.4 94 58.5
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 2.5e-19 100.5 247 34.0
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 4.3e-19 99.8 208 35.1
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 7.4e-19 99.0 246 34.1
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 3.7e-18 96.7 171 40.4
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 8.1e-18 95.5 184 35.3
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-17 95.1 105 47.6
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 2.4e-17 94.0 141 39.7
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 6.9e-17 92.4 83 54.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.9e-17 92.4 148 41.9
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 2.0e-16 90.9 149 42.3
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 2.9e-15 87.0 177 33.3
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 4.9e-15 86.3 98 51.0
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.4e-14 84.7 74 52.7
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.1e-11 75.1 188 33.5
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-11 73.2 138 31.2
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 5.0e-07 59.7 70 38.6
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.9e-06 57.8 72 43.1


User provided reference genes

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