Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 3.1e-187 658.3 333 100.0
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 7.6e-133 477.6 313 75.4
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 8.2e-127 457.6 313 71.9
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 8.4e-124 447.6 313 68.1
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 3.2e-123 445.7 313 67.7
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 6.7e-121 438.0 312 68.9
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 7.4e-120 434.5 317 67.2
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 2.4e-118 429.5 312 68.9
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 5.3e-118 428.3 313 67.4
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 9.0e-118 427.6 313 65.5
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 9.0e-118 427.6 312 66.7
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 1.0e-116 424.1 308 67.2
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 1.3e-116 423.7 313 64.5
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 2.2e-116 422.9 319 64.9
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 6.5e-116 421.4 313 66.5
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.9e-115 419.9 314 66.9
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.6e-114 416.8 313 65.8
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.4e-113 413.7 313 64.9
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 2.3e-113 412.9 313 65.2
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 3.9e-113 412.1 315 65.4
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 3.9e-113 412.1 330 64.5
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.1e-112 410.6 313 64.5
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.5e-112 410.2 303 65.7
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 2.0e-112 409.8 313 62.6
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.5e-112 409.5 313 62.9
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 4.3e-112 408.7 314 65.6
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.3e-112 408.7 313 63.9
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 4.3e-112 408.7 312 64.4
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 7.4e-112 407.9 315 64.8
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.3e-111 407.1 328 61.6
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.7e-111 406.8 313 63.6
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 2.8e-111 406.0 370 55.7
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 3.7e-111 405.6 314 65.0
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 4.8e-111 405.2 314 63.7
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 8.2e-111 404.4 313 61.0
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 1.1e-110 404.1 316 63.0
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 1.4e-110 403.7 314 64.0
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.8e-110 403.3 313 64.5
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 3.1e-110 402.5 313 62.0
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 9.1e-110 401.0 313 63.3
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 1.2e-109 400.6 313 63.6
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 2.0e-109 399.8 314 62.1
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 4.5e-109 398.7 313 63.9
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.3e-108 397.1 303 65.3
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 1.7e-108 396.7 313 63.6
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 2.9e-108 396.0 308 62.0
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 3.8e-108 395.6 313 62.0
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 2.5e-107 392.9 314 63.7
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 7.2e-107 391.3 313 62.0
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 9.4e-107 391.0 313 61.7
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 9.4e-107 391.0 316 60.8
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 1.2e-106 390.6 313 62.0
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 1.6e-106 390.2 312 59.9
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 2.1e-106 389.8 314 60.8
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 2.7e-106 389.4 316 60.8
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 6.1e-106 388.3 313 59.4
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.0e-105 387.5 316 60.4
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.0e-105 387.5 316 60.1
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 1.8e-105 386.7 316 61.1
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 1.8e-105 386.7 313 60.4
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 2.3e-105 386.3 313 60.7
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 6.7e-105 384.8 316 60.1
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 2.0e-104 383.3 313 61.0
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 2.6e-104 382.9 316 58.5
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 3.3e-104 382.5 339 58.4
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 1.7e-103 380.2 314 58.6
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 1.7e-103 380.2 338 58.3
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 4.8e-103 378.6 313 60.4
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 6.3e-103 378.3 314 59.2
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 8.2e-103 377.9 312 59.6
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.4e-102 377.1 315 59.4
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 1.8e-102 376.7 314 61.1
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 1.8e-102 376.7 315 60.0
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 5.9e-101 371.7 314 58.3
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 2.5e-99 366.3 303 61.1
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 9.4e-99 364.4 348 54.3
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 6.1e-98 361.7 279 64.5
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 8.0e-98 361.3 389 50.4
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.0e-97 360.9 298 60.4
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 3.0e-97 359.4 314 57.0
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 5.2e-97 358.6 348 53.4
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 3.3e-96 355.9 423 47.3
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 4.4e-96 355.5 318 59.1
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 1.4e-94 350.5 313 56.5
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.0e-92 344.4 295 59.0
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.7e-92 343.6 302 57.9
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 8.5e-92 341.3 229 71.2
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 2.5e-91 339.7 252 67.1
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 5.7e-88 328.6 311 55.0
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 7.5e-88 328.2 297 58.9
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 5.9e-85 318.5 250 64.0
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 3.2e-83 312.8 329 51.1
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 4.7e-82 308.9 272 58.1
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 3.7e-79 299.3 313 51.4
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 1.8e-78 297.0 228 64.9
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 9.5e-75 284.6 205 69.3
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 2.4e-70 270.0 194 68.6
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.3e-68 264.2 282 51.1
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 8.6e-68 261.5 326 44.5
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 6.1e-66 255.4 193 65.3
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 6.8e-65 251.9 325 42.2
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.3e-60 237.7 310 42.3
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 6.6e-60 235.3 322 39.1
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 1.1e-51 208.0 407 33.7
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.9e-51 207.2 326 37.4
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 3.5e-45 186.4 142 62.0
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.0e-40 170.6 141 60.3
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 1.6e-34 151.0 130 59.2
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 1.2e-32 144.8 109 58.7
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.7e-28 131.0 119 53.8
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.0e-28 130.2 119 53.8
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.7e-28 128.6 119 52.9
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.7e-28 128.6 119 52.9
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.7e-28 128.6 119 52.9
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.3e-27 126.7 119 52.1
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 5.6e-27 125.9 167 43.1
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-26 124.8 107 53.3
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.8e-26 122.9 83 63.9
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 1.8e-25 120.9 434 24.9
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.9e-25 119.0 91 57.1
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.8e-23 113.2 81 61.7
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 3.8e-23 113.2 184 37.0
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.4e-23 112.1 71 67.6
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 1.1e-22 111.7 83 62.7
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 1.4e-22 111.3 109 49.5
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 2.4e-17 94.0 285 30.9
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 9.0e-17 92.0 63 66.7
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.4e-16 90.1 62 61.3
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.4e-16 90.1 62 61.3
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.0e-15 88.6 62 59.7
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 2.5e-14 84.0 131 42.7
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.3e-14 82.0 62 58.1
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.6e-13 81.3 62 56.5
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 3.5e-13 80.1 65 64.6
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 6.0e-13 79.3 53 73.6
PRCOL_00001496 Prasinoderma coloniale HOM05D002536 ORTHO05D006290 3.9e-12 76.6 248 27.0
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.1e-11 75.1 91 42.9
ClCG05G010860 Citrullus lanatus HOM05D002536 ORTHO05D006290 5.8e-08 62.8 42 61.9
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 2.2e-07 60.8 65 43.1


User provided reference genes

Program Settings