Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.3e-193 679.5 333 100.0
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 5.2e-158 561.2 344 78.8
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 2.2e-156 555.8 341 76.8
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.5e-152 543.1 340 75.3
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 9.6e-152 540.4 346 75.7
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 4.7e-151 538.1 340 76.2
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.8e-150 536.2 340 75.6
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 6.9e-150 534.3 344 74.4
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.2e-149 533.5 346 72.8
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.5e-149 533.1 340 74.7
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 2.6e-149 532.3 340 74.7
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 2.2e-148 529.3 340 74.7
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.8e-148 528.5 340 74.4
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 5.4e-147 524.6 340 73.5
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 7.8e-146 520.8 333 73.3
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.0e-145 520.4 347 70.6
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 3.0e-145 518.8 340 71.5
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.1e-144 516.9 336 71.7
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.9e-144 516.2 347 71.2
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 2.5e-144 515.8 344 72.1
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 5.6e-144 514.6 341 71.6
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.1e-142 510.4 336 71.1
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.1e-142 510.4 347 71.2
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 4.0e-142 508.4 335 72.2
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 5.3e-142 508.1 347 70.9
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 6.9e-142 507.7 347 70.9
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 6.9e-142 507.7 348 67.8
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 9.0e-142 507.3 348 68.1
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 1.5e-141 506.5 347 69.7
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 2.0e-141 506.1 338 69.2
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.0e-141 506.1 347 69.5
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 5.8e-141 504.6 348 68.4
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 1.7e-140 503.1 343 69.1
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 2.2e-140 502.7 347 68.3
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 3.8e-140 501.9 340 69.4
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.9e-140 501.5 347 68.9
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.4e-139 500.0 349 66.8
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 1.9e-139 499.6 343 69.7
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.9e-139 499.6 349 68.2
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.9e-139 499.6 350 68.6
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 3.2e-139 498.8 348 68.4
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 4.2e-139 498.4 346 69.7
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 4.2e-139 498.4 345 67.8
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 7.1e-139 497.7 343 69.7
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 7.1e-139 497.7 343 68.5
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.2e-138 496.9 347 68.0
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 1.6e-138 496.5 349 67.6
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 2.1e-138 496.1 347 68.0
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.7e-138 495.7 349 66.5
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.6e-138 495.0 348 66.1
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 6.0e-138 494.6 347 67.1
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.0e-137 493.8 342 67.3
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.3e-137 492.7 343 67.6
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.3e-137 492.7 342 67.3
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 2.3e-137 492.7 337 67.4
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 2.3e-137 492.7 343 67.9
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 3.0e-137 492.3 349 67.0
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 3.0e-137 492.3 347 68.9
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 3.0e-137 492.3 348 67.0
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 3.9e-137 491.9 346 66.5
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 8.7e-137 490.7 348 66.7
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.1e-136 490.3 347 66.0
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.9e-136 489.6 344 66.0
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.3e-136 488.8 342 66.7
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 5.6e-136 488.0 350 64.9
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 7.4e-136 487.6 338 68.9
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.3e-135 486.9 337 67.4
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.8e-135 485.7 349 65.9
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 3.7e-135 485.3 348 67.5
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 3.7e-135 485.3 334 68.0
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 1.8e-134 483.0 340 66.8
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 5.3e-134 481.5 336 67.0
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 5.3e-134 481.5 349 66.2
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 6.9e-134 481.1 349 64.8
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 9.0e-134 480.7 351 64.7
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.2e-133 480.3 336 68.2
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.5e-133 479.9 347 66.0
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 4.5e-133 478.4 348 66.1
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 7.6e-133 477.6 335 68.4
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 1.7e-132 476.5 341 66.9
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 1.7e-132 476.5 341 66.9
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.7e-132 476.5 353 65.7
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.9e-132 475.7 340 66.8
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 4.9e-132 474.9 331 68.3
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 7.1e-131 471.1 340 65.9
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 2.7e-130 469.2 340 64.7
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.9e-128 463.0 359 64.1
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 2.5e-128 462.6 335 67.2
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.5e-128 462.6 352 64.8
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 1.3e-127 460.3 347 61.4
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.3e-127 460.3 334 69.2
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 2.1e-127 459.5 336 62.8
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.2e-127 458.0 332 67.2
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.2e-127 458.0 332 67.2
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.4e-126 456.1 345 64.6
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 2.4e-126 456.1 332 65.4
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.1e-126 455.7 348 67.0
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 4.0e-126 455.3 335 66.3
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 2.6e-125 452.6 348 66.7
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 2.6e-125 452.6 339 67.6
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 5.8e-125 451.4 349 66.2
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-124 450.3 345 63.8
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 4.9e-124 448.4 339 67.0
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 4.9e-124 448.4 336 67.9
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 4.9e-124 448.4 342 62.9
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 6.5e-124 448.0 339 68.1
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 6.5e-124 448.0 339 68.1
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 8.4e-124 447.6 339 68.1
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 1.4e-123 446.8 341 66.6
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.4e-123 446.8 318 66.7
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 2.5e-123 446.0 342 67.3
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 3.2e-123 445.7 338 67.8
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 4.2e-123 445.3 345 67.2
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 7.1e-123 444.5 336 67.9
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 2.7e-122 442.6 348 61.5
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 4.6e-122 441.8 348 65.8
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 3.0e-121 439.1 307 69.1
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 3.9e-121 438.7 339 63.1
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.3e-119 433.7 348 59.8
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 2.6e-117 426.0 348 59.2
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 1.1e-115 420.6 348 58.9
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.6e-114 415.2 325 65.5
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 2.0e-112 409.8 326 58.9
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 4.5e-109 398.7 331 60.7
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 6.5e-108 394.8 272 69.9
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.3e-104 382.5 294 63.3
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 6.3e-95 351.7 256 68.4
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.7e-87 327.0 245 62.4
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.7e-87 327.0 245 62.4
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.4e-86 323.9 292 59.2
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.3e-84 317.4 166 93.4
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 2.5e-83 313.2 337 49.3
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 2.3e-81 306.6 335 50.4
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 1.0e-68 264.6 185 68.1
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.9e-62 243.8 140 80.0
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.8e-56 222.2 109 97.2
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 6.4e-55 218.8 140 68.6
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.2e-54 216.5 279 46.2
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.2e-53 214.5 257 47.1
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.7e-44 184.1 165 55.8
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.2e-37 161.4 137 57.7
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 9.3e-30 135.2 138 56.5
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 9.6e-27 125.2 110 64.5
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.1e-25 121.7 111 62.2
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.5e-24 117.9 99 54.5
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 5.7e-11 72.8 50 58.0
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 3.1e-09 67.0 54 57.4


User provided reference genes

Program Settings