Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 2.8e-91 338.6 166 100.0
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.2e-46 190.3 160 60.6
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 2.5e-44 182.6 160 58.1
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.7e-40 169.9 85 92.9
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 3.8e-40 168.7 84 94.0
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 3.8e-40 168.7 97 83.5
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 6.4e-40 167.9 84 94.0
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 1.9e-39 166.4 83 94.0
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 1.9e-39 166.4 106 74.5
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 3.2e-39 165.6 84 91.7
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 3.2e-39 165.6 83 91.6
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 3.2e-39 165.6 83 91.6
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 3.2e-39 165.6 83 92.8
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 3.2e-39 165.6 83 91.6
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 3.2e-39 165.6 83 92.8
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 4.2e-39 165.2 83 92.8
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 4.2e-39 165.2 83 92.8
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 4.2e-39 165.2 83 91.6
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 4.2e-39 165.2 84 92.9
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.2e-39 165.2 83 92.8
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.2e-39 165.2 83 92.8
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.2e-39 165.2 83 92.8
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.2e-39 165.2 83 92.8
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 4.2e-39 165.2 83 92.8
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.2e-39 165.2 83 92.8
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 4.2e-39 165.2 83 92.8
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 5.4e-39 164.9 83 92.8
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 7.1e-39 164.5 83 91.6
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 7.1e-39 164.5 83 91.6
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 7.1e-39 164.5 83 91.6
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 7.1e-39 164.5 83 91.6
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 7.1e-39 164.5 83 90.4
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 9.3e-39 164.1 83 91.6
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 9.3e-39 164.1 83 91.6
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 9.3e-39 164.1 83 90.4
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 9.3e-39 164.1 83 91.6
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.2e-38 163.7 83 91.6
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.6e-38 163.3 83 90.4
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 1.6e-38 163.3 83 90.4
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.6e-38 163.3 83 91.6
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.6e-38 163.3 83 90.4
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.6e-38 163.3 83 91.6
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 90.4
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 91.6
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 91.6
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 91.6
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 2.1e-38 162.9 76 96.1
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 90.4
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 91.6
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 90.4
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 91.6
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 90.4
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 91.6
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 91.6
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 91.6
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 2.1e-38 162.9 83 91.6
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 2.7e-38 162.5 76 96.1
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 2.7e-38 162.5 83 90.4
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.7e-38 162.5 83 90.4
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.7e-38 162.5 76 96.1
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.7e-38 162.5 83 90.4
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 2.7e-38 162.5 76 96.1
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 2.7e-38 162.5 83 90.4
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.7e-38 162.5 83 91.6
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 3.5e-38 162.2 78 93.6
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.5e-38 162.2 83 90.4
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.5e-38 162.2 76 96.1
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 3.5e-38 162.2 83 89.2
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 4.6e-38 161.8 76 94.7
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 4.6e-38 161.8 76 94.7
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 4.6e-38 161.8 83 88.0
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 4.6e-38 161.8 83 89.2
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 6.0e-38 161.4 83 90.4
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 6.0e-38 161.4 83 90.4
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 7.9e-38 161.0 83 90.4
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.9e-38 161.0 83 89.2
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 7.9e-38 161.0 83 89.2
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 7.9e-38 161.0 83 89.2
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 7.9e-38 161.0 78 92.3
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 7.9e-38 161.0 83 90.4
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 1.0e-37 160.6 78 92.3
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 1.0e-37 160.6 83 90.4
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 1.0e-37 160.6 78 92.3
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 1.0e-37 160.6 78 92.3
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 1.0e-37 160.6 76 93.4
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.3e-37 160.2 83 89.2
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 1.3e-37 160.2 84 88.1
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 1.3e-37 160.2 90 85.6
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.3e-37 160.2 81 87.7
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 1.8e-37 159.8 76 94.7
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.8e-37 159.8 83 89.2
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 1.8e-37 159.8 78 91.0
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 2.3e-37 159.5 83 90.4
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.3e-37 159.5 83 86.7
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.3e-37 159.5 81 87.7
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 3.9e-37 158.7 78 88.5
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 5.1e-37 158.3 78 91.0
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 5.1e-37 158.3 76 92.1
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 8.7e-37 157.5 78 92.3
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 1.1e-36 157.1 76 90.8
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 1.1e-36 157.1 76 90.8
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 1.1e-36 157.1 83 85.5
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 1.1e-36 157.1 83 85.5
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 1.5e-36 156.8 76 90.8
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 3.3e-36 155.6 78 88.5
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 3.3e-36 155.6 78 88.5
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 3.3e-36 155.6 84 85.7
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 5.6e-36 154.8 76 89.5
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 5.6e-36 154.8 76 89.5
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 5.6e-36 154.8 117 67.5
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 9.6e-36 154.1 89 80.9
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 1.6e-35 153.3 76 88.2
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 2.1e-35 152.9 76 88.2
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 3.7e-35 152.1 82 80.5
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 6.2e-35 151.4 76 88.2
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 8.1e-35 151.0 83 81.9
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 8.1e-35 151.0 83 85.5
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 8.1e-35 151.0 83 81.9
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 8.1e-35 151.0 83 85.5
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 8.1e-35 151.0 83 85.5
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 2.4e-34 149.4 76 89.5
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 2.4e-34 149.4 76 89.5
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 3.1e-34 149.1 83 79.5
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 4.0e-34 148.7 76 89.5
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 6.9e-34 147.9 83 81.9
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 6.9e-34 147.9 76 89.5
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 6.9e-34 147.9 76 89.5
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 6.9e-34 147.9 76 89.5
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 6.9e-34 147.9 76 89.5
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 6.9e-34 147.9 76 89.5
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 6.9e-34 147.9 76 89.5
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 6.9e-34 147.9 76 89.5
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 6.9e-34 147.9 76 89.5
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 9.0e-34 147.5 76 88.2
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 2.6e-33 146.0 76 84.2
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 3.4e-33 145.6 76 86.8
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 4.5e-33 145.2 76 86.8
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 7.6e-33 144.4 83 78.3
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 1.3e-32 143.7 108 67.6
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.7e-32 143.3 107 67.3
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 4.2e-31 138.7 146 51.4
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 5.5e-31 138.3 68 91.2
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.2e-30 137.1 73 87.7
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.1e-30 136.3 76 76.3
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 4.6e-30 135.2 64 95.3
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 1.3e-29 133.7 83 77.1
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.8e-29 133.3 70 84.3
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.1e-28 130.6 65 87.7
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.1e-26 124.0 64 89.1
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 3.1e-26 122.5 144 50.0
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.8e-24 115.5 99 60.6
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 1.1e-23 114.0 61 88.5
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 3.2e-23 112.5 161 41.6
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 6.1e-22 108.2 87 64.4
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 5.3e-18 95.1 56 80.4
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 5.9e-17 91.7 50 84.0
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.0e-16 90.9 53 79.2
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 5.0e-16 88.6 44 84.1
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 9.4e-15 84.3 47 83.0
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 3.3e-12 75.9 34 100.0
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 1.7e-11 73.6 34 97.1
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 2.0e-09 66.6 37 81.1
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 2.9e-08 62.8 34 82.4
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.4e-07 60.5 76 46.1
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.4e-07 60.5 76 46.1


User provided reference genes

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