Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.3e-69 266.2 127 100.0
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.7e-48 196.1 94 100.0
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 3.4e-33 145.2 94 77.7
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 9.9e-33 143.7 96 77.1
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.9e-32 142.1 96 76.0
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 4.9e-32 141.4 100 72.0
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 4.9e-32 141.4 96 76.0
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 1.1e-31 140.2 96 76.0
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.1e-31 140.2 96 76.0
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 3.2e-31 138.7 94 74.5
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 7.1e-31 137.5 96 75.0
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.2e-30 136.7 93 75.3
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.2e-30 136.7 95 72.6
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 3.5e-30 135.2 95 70.5
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 7.9e-30 134.0 100 68.0
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 1.0e-29 133.7 95 70.5
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.3e-29 132.5 93 72.0
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.3e-29 132.5 98 66.3
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 3.0e-29 132.1 100 66.0
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 3.0e-29 132.1 95 69.5
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 3.0e-29 132.1 95 71.6
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.9e-29 131.7 94 69.1
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 6.7e-29 131.0 93 73.1
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 6.7e-29 131.0 93 71.0
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 8.7e-29 130.6 93 69.9
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 8.7e-29 130.6 98 67.3
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 8.7e-29 130.6 100 65.0
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 8.7e-29 130.6 95 70.5
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.1e-28 130.2 93 72.0
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 1.1e-28 130.2 93 73.1
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.5e-28 129.8 93 73.1
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 1.5e-28 129.8 102 64.7
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 1.5e-28 129.8 98 68.4
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 1.9e-28 129.4 93 66.7
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 3.3e-28 128.6 100 66.0
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 3.3e-28 128.6 95 69.5
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 4.3e-28 128.3 95 69.5
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 4.3e-28 128.3 93 68.8
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 4.3e-28 128.3 95 69.5
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 5.6e-28 127.9 98 66.3
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 5.6e-28 127.9 95 69.5
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 7.4e-28 127.5 98 65.3
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 7.4e-28 127.5 100 65.0
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 7.4e-28 127.5 93 69.9
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 9.6e-28 127.1 93 66.7
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.3e-27 126.7 100 64.0
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 1.3e-27 126.7 93 69.9
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.6e-27 126.3 97 68.0
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 4.8e-27 124.8 95 67.4
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 4.8e-27 124.8 103 62.1
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 8.2e-27 124.0 98 65.3
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.2e-27 124.0 98 65.3
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.2e-27 124.0 98 65.3
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 8.2e-27 124.0 100 62.0
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 1.1e-26 123.6 97 64.9
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 1.1e-26 123.6 100 64.0
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.4e-26 123.2 93 66.7
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 1.4e-26 123.2 95 65.3
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 1.8e-26 122.9 95 66.3
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.1e-26 122.1 93 65.6
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 4.0e-26 121.7 100 63.0
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 4.0e-26 121.7 91 69.2
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 6.9e-26 120.9 100 61.0
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 9.0e-26 120.6 102 61.8
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 9.0e-26 120.6 95 63.2
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 9.0e-26 120.6 93 64.5
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 2.0e-25 119.4 93 65.6
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.0e-25 119.4 91 67.0
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 2.6e-25 119.0 92 66.3
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.6e-25 119.0 98 63.3
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 2.6e-25 119.0 104 63.5
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 2.6e-25 119.0 112 60.7
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 3.4e-25 118.6 100 62.0
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 4.5e-25 118.2 95 64.2
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 5.8e-25 117.9 93 63.4
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 7.6e-25 117.5 97 63.9
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 7.6e-25 117.5 100 62.0
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 7.6e-25 117.5 95 68.4
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 7.6e-25 117.5 102 60.8
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 1.7e-24 116.3 95 63.2
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 2.2e-24 115.9 93 59.1
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.9e-24 114.8 101 60.4
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.9e-24 114.8 101 60.4
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 4.9e-24 114.8 101 60.4
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 4.9e-24 114.8 107 62.6
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 4.9e-24 114.8 95 62.1
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 6.5e-24 114.4 101 59.4
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.1e-23 113.6 92 71.7
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 1.9e-23 112.8 93 59.1
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 3.2e-23 112.1 93 61.3
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 3.2e-23 112.1 93 60.2
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 5.5e-23 111.3 96 61.5
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 7.1e-23 110.9 93 60.2
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 9.3e-23 110.5 93 60.2
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 9.3e-23 110.5 92 66.3
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 2.7e-22 109.0 95 57.9
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 6.0e-22 107.8 93 63.4
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 1.3e-21 106.7 93 59.1
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 1.9e-20 102.8 99 61.6
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.9e-20 102.8 93 58.1
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 2.5e-20 102.4 99 56.6
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 3.3e-20 102.1 93 58.1
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 4.3e-20 101.7 93 58.1
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 4.3e-20 101.7 93 57.0
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 9.7e-20 100.5 93 52.7
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 1.3e-19 100.1 111 49.5
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 4.8e-19 98.2 76 64.5
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 4.8e-19 98.2 81 60.5
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 8.2e-19 97.4 95 62.1
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 5.3e-18 94.7 80 61.2
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 9.0e-18 94.0 102 51.0
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 1.2e-17 93.6 81 56.8
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 1.5e-17 93.2 98 55.1
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 4.5e-17 91.7 96 54.2
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 4.5e-17 91.7 104 52.9
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 7.6e-17 90.9 91 51.6
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.0e-16 90.5 104 51.9
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 1.3e-16 90.1 80 56.2
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.2e-16 89.4 58 74.1
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 2.2e-16 89.4 81 55.6
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.1e-15 87.0 80 60.0
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.5e-15 85.9 81 58.0
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 9.4e-15 84.0 81 58.0
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 9.4e-15 84.0 93 49.5
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.1e-14 82.8 80 52.5
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 1.4e-13 80.1 108 43.5
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 5.1e-13 78.2 81 54.3
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 8.8e-13 77.4 115 50.4
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 1.5e-12 76.6 81 50.6
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 7.4e-12 74.3 73 50.7
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 4.8e-11 71.6 92 48.9
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 4.8e-11 71.6 69 53.6
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 6.3e-11 71.2 48 75.0
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 1.1e-10 70.5 100 42.0
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 5.3e-10 68.2 102 41.2
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 6.9e-10 67.8 107 36.4
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 6.9e-10 67.8 47 72.3
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.5e-09 66.6 80 45.0
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 2.6e-09 65.9 72 48.6
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 5.9e-09 64.7 89 39.3
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 5.9e-09 64.7 96 44.8
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 1.0e-08 63.9 87 41.4
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 3.8e-08 62.0 109 35.8
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 8.5e-08 60.8 72 45.8
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 8.5e-08 60.8 72 45.8
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 8.5e-08 60.8 72 45.8
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 1.4e-07 60.1 80 41.2
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 5.5e-07 58.2 73 49.3
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 7.2e-07 57.8 102 44.1
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 1.2e-06 57.0 111 37.8
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 1.6e-06 56.6 96 42.7


User provided reference genes

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