Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 0.0e+00 1087.8 600 100.0
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.1e-141 506.9 624 54.6
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 7.3e-118 428.7 631 48.0
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 8.9e-116 421.8 613 48.5
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 2.8e-109 400.2 630 45.7
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 4.0e-108 396.4 679 45.2
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.2e-105 386.3 592 46.6
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 3.3e-102 376.7 545 47.2
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 7.9e-96 355.5 690 41.4
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 3.0e-95 353.6 611 42.4
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 6.7e-95 352.4 637 42.1
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.5e-91 341.3 645 41.1
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 2.9e-90 337.0 640 42.5
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 3.2e-89 333.6 634 40.4
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 6.0e-88 329.3 643 39.3
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.9e-88 328.9 635 40.8
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.0e-87 328.6 638 41.5
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 6.7e-87 325.9 665 40.0
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.5e-86 324.7 617 40.5
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.3e-86 323.2 640 42.2
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 2.8e-85 320.5 613 40.5
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 3.7e-85 320.1 612 40.2
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 6.2e-85 319.3 618 39.8
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.1e-84 318.5 616 40.3
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 1.4e-84 318.2 677 38.0
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.8e-84 317.8 639 39.4
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.4e-84 317.4 581 41.1
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 2.4e-84 317.4 658 40.9
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 3.1e-84 317.0 688 37.9
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.2e-83 315.1 690 37.4
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.0e-83 314.3 350 57.1
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 7.6e-83 312.4 644 40.4
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 2.2e-82 310.8 628 40.6
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 6.5e-82 309.3 653 39.7
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 6.5e-82 309.3 633 39.7
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.9e-81 307.8 630 37.8
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 4.2e-81 306.6 669 38.1
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.1e-80 304.3 632 39.4
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.5e-80 303.5 627 39.7
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 4.6e-80 303.1 604 38.9
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 1.8e-79 301.2 594 39.2
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 2.3e-79 300.8 648 37.2
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.3e-79 300.8 627 38.8
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 3.9e-79 300.1 641 38.8
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.5e-78 298.1 660 37.9
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 2.5e-78 297.4 686 37.2
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 7.4e-78 295.8 358 55.3
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 7.4e-78 295.8 621 38.0
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 8.2e-77 292.4 627 35.7
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 8.2e-77 292.4 633 38.9
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.4e-76 291.6 619 38.1
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.4e-76 290.8 627 37.8
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.1e-76 290.4 623 37.4
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 4.1e-76 290.0 627 38.8
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 4.1e-76 290.0 644 37.7
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 5.3e-76 289.7 611 39.0
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 6.9e-76 289.3 322 54.7
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 1.3e-74 285.0 627 36.0
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.3e-74 285.0 663 36.2
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.7e-74 284.6 633 39.5
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.8e-74 283.5 626 37.2
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 6.5e-74 282.7 599 39.4
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 6.5e-74 282.7 628 37.6
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.1e-73 282.0 617 37.6
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 1.1e-73 282.0 599 38.6
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 5.5e-73 279.6 626 37.1
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.2e-72 278.5 574 39.2
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 1.6e-72 278.1 615 38.0
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.1e-72 277.7 602 38.4
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.6e-72 276.6 628 37.7
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.6e-72 276.6 602 37.7
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.4e-71 275.0 621 38.6
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 5.1e-71 273.1 611 36.5
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.5e-70 271.6 319 55.2
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 1.5e-70 271.6 630 36.3
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 2.5e-70 270.8 657 36.2
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 5.7e-70 269.6 357 50.1
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 7.4e-70 269.2 635 36.5
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.3e-69 268.5 607 37.1
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.3e-69 268.5 616 38.0
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.3e-69 268.5 699 35.3
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.7e-69 268.1 613 36.2
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.8e-69 267.3 623 36.4
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 3.7e-69 266.9 620 36.3
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 4.8e-69 266.5 647 34.3
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.1e-68 265.4 609 37.9
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 2.4e-68 264.2 608 35.7
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.2e-67 261.9 269 59.5
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 4.5e-67 260.0 605 36.0
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 5.9e-67 259.6 615 36.4
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 7.7e-67 259.2 605 36.9
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 1.0e-66 258.8 605 36.4
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 2.2e-66 257.7 644 37.4
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 2.9e-66 257.3 605 35.9
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.1e-65 255.4 336 50.0
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 3.2e-65 253.8 680 35.6
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.6e-64 251.5 615 35.1
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 4.7e-64 250.0 643 34.2
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.0e-63 247.3 288 53.8
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 3.9e-63 246.9 619 36.3
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 3.9e-63 246.9 636 35.4
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 5.1e-63 246.5 603 34.0
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 9.7e-62 242.3 653 33.8
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.3e-61 241.9 650 34.3
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.3e-61 241.9 627 35.2
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 8.2e-61 239.2 264 53.4
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 8.2e-61 239.2 649 34.5
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 9.1e-60 235.7 615 34.6
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 3.5e-59 233.8 537 38.4
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 7.7e-59 232.6 625 35.0
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 1.0e-58 232.3 611 34.4
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 3.2e-57 227.3 610 34.4
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 5.5e-57 226.5 626 32.4
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 5.5e-57 226.5 275 53.8
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 5.5e-57 226.5 275 53.8
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.5e-57 226.5 524 38.5
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 3.3e-54 217.2 623 32.9
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 5.7e-54 216.5 560 35.0
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 9.7e-54 215.7 636 31.9
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 3.7e-53 213.8 603 33.0
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 1.4e-52 211.8 605 34.4
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.8e-52 211.5 263 49.0
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 5.3e-52 209.9 628 31.4
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 9.1e-52 209.1 610 33.4
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 4.5e-51 206.8 611 33.6
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.7e-50 204.9 622 32.2
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 2.2e-50 204.5 625 32.3
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 1.1e-49 202.2 506 34.6
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 4.2e-49 200.3 216 56.5
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 7.2e-49 199.5 216 56.0
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.6e-48 198.4 447 37.6
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.8e-47 194.9 583 30.9
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 4.0e-47 193.7 617 31.8
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 4.4e-46 190.3 620 31.5
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 3.7e-45 187.2 249 47.8
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 2.4e-44 184.5 621 32.7
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.5e-41 174.5 609 30.7
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.4e-39 168.7 236 44.9
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.8e-39 168.3 253 41.9
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 5.7e-38 163.3 453 33.8
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 7.5e-38 162.9 249 45.4
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.1e-36 159.1 567 30.9
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 3.1e-36 157.5 446 33.6
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.2e-35 155.6 303 40.3
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.3e-33 147.5 274 42.3
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 5.2e-31 140.2 173 54.3
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.4e-28 132.1 312 32.1
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.8e-28 131.7 182 47.8
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 7.8e-27 126.3 243 35.8
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 8.9e-23 112.8 121 57.0
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 3.7e-21 107.5 264 37.1
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 1.1e-20 105.9 223 35.4
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 5.4e-20 103.6 181 42.0
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 2.7e-19 101.3 230 39.1
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 5.0e-18 97.1 129 50.4
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.4e-15 89.0 194 36.1
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 4.0e-15 87.4 517 25.9
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 3.4e-14 84.3 82 58.5
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 1.7e-13 82.0 175 37.1
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 4.9e-13 80.5 91 50.5
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.1e-12 77.4 52 69.2
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.1e-12 77.4 52 69.2
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 7.1e-12 76.6 76 59.2
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.7e-10 72.0 99 40.4
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 2.3e-10 71.6 159 38.4
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 3.0e-10 71.2 59 64.4
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.9e-10 70.9 138 37.0
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 1.1e-09 69.3 55 63.6
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 1.6e-08 65.5 360 27.5
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 6.2e-08 63.5 90 47.8
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 8.1e-08 63.2 52 59.6
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 8.1e-08 63.2 96 45.8
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 1.1e-07 62.8 52 59.6
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.4e-07 62.4 65 55.4
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 2.3e-07 61.6 82 43.9
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.2e-07 60.5 89 49.4
Sp2g28160 Schrenkiella parvula HOM05D008017 ORTHO05D009829 5.2e-07 60.5 50 54.0
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 6.8e-07 60.1 50 56.0
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 6.8e-07 60.1 50 56.0
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 1.2e-06 59.3 82 43.9
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 1.5e-06 58.9 57 49.1
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 1.5e-06 58.9 101 42.6
A06p31900 Brassica napus HOM05D008017 ORTHO05D009829 4.4e-06 57.4 57 47.4
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 4.4e-06 57.4 105 41.9


User provided reference genes

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