Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.0e-51 204.9 105 100.0
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.2e-49 198.7 102 98.0
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.2e-49 198.7 102 98.0
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.0e-43 179.9 90 100.0
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 2.0e-34 149.1 101 71.3
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 7.7e-31 137.1 102 68.6
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 1.7e-30 136.0 100 69.0
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 2.2e-30 135.6 101 66.3
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 2.2e-30 135.6 101 66.3
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 3.8e-30 134.8 101 67.3
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 8.5e-30 133.7 101 65.3
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 5.5e-29 131.0 102 63.7
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 5.5e-29 131.0 100 64.0
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 1.6e-28 129.4 100 69.0
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 1.6e-28 129.4 97 66.0
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 2.7e-28 128.6 101 65.3
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 4.7e-28 127.9 101 62.4
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 6.1e-28 127.5 103 65.0
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 1.4e-27 126.3 102 63.7
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 1.8e-27 125.9 100 60.0
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 5.2e-27 124.4 102 63.7
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 5.2e-27 124.4 97 64.9
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.1e-26 123.2 102 58.8
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.1e-26 123.2 96 65.6
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.1e-26 123.2 96 65.6
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 1.5e-26 122.9 102 62.7
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 2.0e-26 122.5 100 61.0
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 2.6e-26 122.1 100 64.0
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 2.6e-26 122.1 94 62.8
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 2.6e-26 122.1 98 63.3
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 3.3e-26 121.7 100 65.0
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 3.3e-26 121.7 96 65.6
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 3.3e-26 121.7 100 63.0
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 4.4e-26 121.3 103 64.1
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 2.2e-25 119.0 103 62.1
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 6.3e-25 117.5 100 59.0
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 1.1e-24 116.7 103 56.3
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 1.1e-24 116.7 92 62.0
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.4e-24 116.3 96 58.3
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 5.3e-24 114.4 102 54.9
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 5.3e-24 114.4 96 54.2
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 9.1e-24 113.6 96 60.4
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 1.2e-23 113.2 100 56.0
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 1.6e-23 112.8 96 60.4
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.6e-23 112.8 89 66.3
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.6e-23 112.8 101 53.5
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 7.7e-23 110.5 100 55.0
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.0e-22 110.2 101 53.5
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 2.9e-22 108.6 101 54.5
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 5.0e-22 107.8 95 56.8
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 5.0e-22 107.8 96 55.2
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 6.5e-22 107.5 96 53.1
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 1.5e-21 106.3 101 51.5
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 1.9e-21 105.9 101 50.5
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 3.2e-21 105.1 95 60.0
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 4.2e-21 104.8 96 52.1
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 4.2e-21 104.8 102 52.0
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 4.2e-21 104.8 101 46.5
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.2e-21 104.0 66 77.3
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 9.4e-21 103.6 101 48.5
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 2.1e-20 102.4 100 53.0
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 3.6e-20 101.7 96 52.1
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 3.6e-20 101.7 101 54.5
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 6.1e-20 100.9 66 72.7
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 8.0e-20 100.5 103 49.5
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 8.0e-20 100.5 101 49.5
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 1.4e-19 99.8 101 51.5
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 1.4e-19 99.8 102 51.0
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.4e-19 99.8 66 72.7
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 1.4e-19 99.8 95 55.8
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 1.8e-19 99.4 96 52.1
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 5.2e-19 97.8 96 51.0
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 6.8e-19 97.4 64 71.9
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 8.8e-19 97.1 88 58.0
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.2e-18 96.7 96 52.1
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 1.5e-18 96.3 59 76.3
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 2.6e-18 95.5 123 44.7
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 2.6e-18 95.5 76 57.9
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 7.5e-18 94.0 74 59.5
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.2e-17 92.4 91 51.6
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 5.4e-16 87.8 78 56.4
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 2.0e-15 85.9 78 57.7
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 1.0e-14 83.6 93 50.5
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.3e-14 83.2 64 65.6
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.3e-14 83.2 58 67.2
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 4.7e-12 74.7 73 49.3
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 1.4e-11 73.2 96 47.9
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 2.3e-11 72.4 112 42.0
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 1.2e-07 60.1 94 28.7
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 8.6e-06 53.9 97 28.9


User provided reference genes

Program Settings