Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 0.0e+00 3165.2 1652 100.0
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 0.0e+00 3094.3 1652 98.4
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 0.0e+00 1446.4 1605 55.8
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 0.0e+00 1416.4 1623 56.1
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 8.9e-291 1004.6 1639 44.5
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 1.7e-289 1000.3 1620 44.9
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 3.4e-282 976.1 1629 45.0
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 5.6e-269 932.2 1680 41.8
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 1.4e-267 927.5 1631 42.7
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 2.1e-263 913.7 1710 41.0
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.9e-257 893.3 1608 41.9
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.5e-255 886.3 1638 41.3
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.9e-253 880.6 1687 40.8
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 7.6e-250 868.6 1622 41.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 8.4e-249 865.1 1584 41.9
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.0e-241 841.6 1627 39.3
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 2.5e-240 837.0 1626 39.3
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 7.6e-234 815.5 1636 39.9
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 7.2e-232 808.9 1645 40.6
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 2.7e-231 807.0 1642 39.5
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 6.1e-231 805.8 1642 39.6
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.4e-227 794.7 1634 39.4
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 4.1e-227 793.1 1644 39.5
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 1.9e-224 784.3 1619 38.8
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 5.5e-224 782.7 1636 38.3
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 7.7e-218 762.3 1653 39.0
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.9e-214 750.0 1634 38.8
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.1e-213 748.4 1654 38.8
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.7e-212 744.6 1651 38.8
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 1.7e-212 744.6 1738 38.0
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.5e-210 736.9 1631 38.1
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.7e-209 734.6 1639 37.4
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 2.9e-209 733.8 1643 37.9
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 6.5e-209 732.6 1656 38.6
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.5e-208 730.7 1255 43.4
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 7.2e-208 729.2 1622 38.0
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 9.4e-208 728.8 1608 39.3
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 2.1e-207 727.6 1638 38.0
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 3.6e-207 726.9 1644 38.5
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 2.3e-206 724.2 1685 36.8
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 1.2e-205 721.8 1640 38.2
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 1.5e-205 721.5 1659 39.0
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 8.2e-204 715.7 1645 38.3
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 7.0e-203 712.6 1632 37.1
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 5.5e-200 703.0 1685 37.0
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 9.4e-200 702.2 1637 37.8
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 8.0e-199 699.1 1647 37.8
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.8e-195 688.0 1677 36.7
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 9.1e-195 685.6 1676 37.5
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 1.6e-194 684.9 1653 37.5
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 7.7e-194 682.6 1671 36.6
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.3e-193 681.0 1635 37.1
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.9e-193 680.6 1640 36.8
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.6e-193 679.1 1635 36.5
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.5e-192 678.3 1616 36.3
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.0e-191 672.5 1644 36.5
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 6.8e-190 669.5 1623 38.0
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.5e-189 668.3 1633 35.5
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.2e-183 648.7 1620 36.1
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 1.4e-182 645.2 1696 36.6
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 1.3e-180 638.6 1624 36.5
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 6.4e-180 636.3 1637 36.9
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 2.5e-176 624.4 1639 36.0
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.6e-175 621.7 1631 36.7
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 1.6e-175 621.7 1636 35.5
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 4.0e-174 617.1 1689 34.5
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 7.5e-173 612.8 1622 36.2
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 8.1e-167 592.8 1368 36.0
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 5.2e-166 590.1 1634 35.1
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.7e-164 585.1 1625 34.8
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 2.9e-164 584.3 1640 34.5
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 4.6e-162 577.0 1644 34.9
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.0e-161 575.9 1759 33.1
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 5.1e-161 573.5 1631 35.1
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 4.3e-160 570.5 1651 33.7
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.3e-160 570.5 1618 33.9
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 4.7e-159 567.0 1631 34.9
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 2.2e-156 558.1 1673 33.8
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 9.2e-155 552.7 1631 34.7
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 6.6e-153 546.6 1654 33.8
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 2.8e-151 541.2 1639 34.7
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 3.4e-149 534.3 1605 33.4
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 8.4e-148 529.6 1443 35.3
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 2.1e-146 525.0 1619 33.3
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 7.8e-146 523.1 1248 37.5
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 4.3e-144 517.3 1672 33.1
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.8e-143 514.6 1610 32.8
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.7e-140 505.4 1226 37.4
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 4.6e-138 497.3 1544 32.1
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 4.6e-138 497.3 1626 32.0
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 1.4e-134 485.7 1618 31.9
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 2.4e-134 485.0 1725 31.5
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 2.0e-133 481.9 1617 32.0
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 3.8e-132 477.6 1623 32.6
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.9e-131 475.3 1723 31.6
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 7.1e-131 473.4 1627 33.9
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.6e-130 472.2 512 55.7
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 3.5e-130 471.1 1419 33.6
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 7.9e-130 469.9 1611 33.1
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 8.7e-129 466.5 1605 31.3
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 1.1e-128 466.1 1611 31.5
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.5e-128 464.9 1635 31.3
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 2.6e-125 454.9 1634 32.7
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 6.5e-124 450.3 1640 31.1
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 9.3e-123 446.4 1623 31.6
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 2.3e-121 441.8 1618 31.5
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 1.1e-120 439.5 1477 32.7
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.0e-116 426.4 1623 31.4
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 8.5e-116 423.3 1622 31.3
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 3.6e-114 417.9 1616 30.6
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.8e-113 415.6 1585 31.2
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 3.0e-113 414.8 1614 29.9
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 5.1e-113 414.1 1619 30.1
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.5e-112 412.5 1634 30.6
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 1.3e-111 409.5 1610 29.8
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 2.0e-109 402.1 1637 30.0
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.4e-109 401.4 955 35.1
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 5.5e-107 394.0 733 41.5
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 5.3e-102 377.5 1229 33.0
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 1.1e-99 369.8 1603 29.1
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 6.7e-89 334.0 1491 29.0
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 5.9e-85 320.9 427 48.7
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 6.1e-82 310.8 327 56.6
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 1.3e-79 303.1 1684 27.9
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 5.4e-78 297.7 1585 27.4
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 1.6e-61 243.0 193 69.9
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.8e-61 240.7 706 34.8
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 7.8e-61 240.7 1669 27.1
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.9e-60 238.4 201 67.2
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.7e-55 223.0 1516 28.0
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 9.2e-54 217.2 1470 27.3
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.6e-53 214.9 1292 26.7
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.0e-49 201.8 477 34.8
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.6e-48 199.1 1609 24.6
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.2e-47 196.1 218 51.4
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.3e-44 186.0 762 29.7
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.8e-41 176.4 213 54.5
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 4.2e-38 165.2 1508 25.5
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.3e-36 159.5 386 34.2
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.3e-28 133.7 1290 23.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.6e-28 131.3 499 31.7
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.5e-24 120.2 83 73.5
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.7e-23 116.7 835 28.3
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.4e-22 111.7 1411 24.9
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 2.1e-21 109.8 518 33.4
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 1.8e-17 96.7 1004 27.1
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.3e-17 95.1 235 38.3
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 7.1e-14 84.7 585 30.3
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.3e-11 75.5 1393 23.8
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 9.6e-11 74.3 178 36.0
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.4e-09 69.7 1502 24.4
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 7.6e-08 64.7 207 32.9
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 2.2e-07 63.2 229 31.9
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.4e-06 60.5 132 37.9


User provided reference genes

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