Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 4.2e-151 538.1 291 100.0
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 1.3e-115 420.2 293 80.9
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 9.0e-114 414.1 291 78.0
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.2e-110 403.7 291 76.3
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 6.7e-109 397.9 291 75.6
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 1.5e-105 386.7 291 75.3
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 3.8e-104 382.1 291 73.2
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 4.2e-103 378.6 289 73.0
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 2.2e-99 366.3 293 72.7
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.4e-98 362.8 303 71.3
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.1e-98 362.5 293 72.7
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 7.0e-98 361.3 300 70.7
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 2.6e-97 359.4 291 70.8
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.9e-97 358.2 298 70.8
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 5.9e-97 358.2 306 69.0
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.0e-96 357.5 293 70.3
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 3.8e-96 355.5 291 69.8
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 5.0e-96 355.1 304 69.7
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 1.1e-95 354.0 299 69.6
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 1.4e-95 353.6 299 69.6
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 7.2e-95 351.3 299 69.6
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 1.2e-94 350.5 294 69.0
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.6e-94 350.1 300 70.0
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.6e-94 349.0 280 71.4
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.4e-93 347.1 288 70.5
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 2.3e-93 346.3 296 69.3
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 5.2e-93 345.1 296 68.9
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 6.7e-93 344.7 298 68.1
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 6.7e-93 344.7 301 68.1
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 6.7e-93 344.7 295 68.8
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 8.8e-93 344.4 295 67.1
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.5e-92 343.6 293 68.9
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 2.0e-92 343.2 305 67.2
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 4.4e-92 342.0 293 70.3
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 7.4e-92 341.3 297 68.0
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 7.4e-92 341.3 294 69.4
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 9.7e-92 340.9 298 67.8
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 1.3e-91 340.5 297 68.4
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.3e-91 340.5 298 68.1
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 1.7e-91 340.1 295 68.5
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.8e-91 339.3 295 69.2
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 4.8e-91 338.6 304 66.1
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 6.3e-91 338.2 291 68.4
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 6.3e-91 338.2 296 66.6
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 8.2e-91 337.8 296 67.9
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 8.2e-91 337.8 296 67.9
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 1.8e-90 336.7 290 69.3
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 3.1e-90 335.9 291 67.4
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 4.1e-90 335.5 294 67.3
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 4.1e-90 335.5 294 67.0
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 5.3e-90 335.1 294 67.0
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 5.3e-90 335.1 295 68.1
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 7.0e-90 334.7 285 68.1
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 7.0e-90 334.7 297 66.3
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.2e-89 334.0 288 66.7
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 1.6e-89 333.6 298 65.1
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.6e-89 333.6 296 67.6
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.6e-89 333.6 294 66.7
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.0e-89 333.2 297 66.3
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 2.0e-89 333.2 299 64.9
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.6e-89 332.8 296 67.2
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 3.5e-89 332.4 295 68.1
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 4.5e-89 332.0 283 70.0
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 4.5e-89 332.0 294 67.0
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 4.5e-89 332.0 295 67.1
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 5.9e-89 331.6 295 65.4
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 7.7e-89 331.3 307 65.8
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.0e-88 330.9 286 69.9
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 1.7e-88 330.1 292 67.5
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.9e-88 329.3 281 66.5
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 3.8e-88 328.9 305 65.2
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 5.0e-88 328.6 218 79.8
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 6.5e-88 328.2 300 65.0
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.1e-87 327.4 299 64.9
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.1e-87 327.4 292 66.4
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.9e-87 326.6 302 64.6
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 2.5e-87 326.2 294 65.3
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.2e-87 325.9 299 65.2
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 3.2e-87 325.9 300 64.0
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 3.2e-87 325.9 306 63.1
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 4.2e-87 325.5 293 66.2
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 7.2e-87 324.7 308 65.3
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 2.7e-86 322.8 292 67.8
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 4.7e-86 322.0 294 65.3
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 4.7e-86 322.0 299 64.2
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 6.1e-86 321.6 302 64.9
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 8.0e-86 321.2 296 67.6
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 1.0e-85 320.9 302 61.6
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 1.0e-85 320.9 214 78.5
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.0e-85 320.9 303 63.7
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 1.4e-85 320.5 294 66.3
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 1.4e-85 320.5 302 63.9
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 1.8e-85 320.1 276 68.5
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 2.3e-85 319.7 294 63.6
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 4.0e-85 318.9 296 65.5
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 5.2e-85 318.5 302 63.6
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 5.2e-85 318.5 296 63.5
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 8.8e-85 317.8 296 63.5
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.0e-84 316.6 291 64.9
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 3.3e-84 315.8 302 62.9
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 3.3e-84 315.8 300 63.0
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 3.3e-84 315.8 300 62.7
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 4.4e-84 315.5 299 63.2
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 5.7e-84 315.1 299 62.9
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 7.5e-84 314.7 299 62.9
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 7.5e-84 314.7 300 63.3
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 9.7e-84 314.3 299 62.2
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 2.2e-83 313.2 300 62.7
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 2.8e-83 312.8 270 66.3
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 2.8e-83 312.8 357 56.9
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 4.8e-83 312.0 200 80.5
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.1e-82 310.8 296 63.5
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.1e-82 310.8 296 63.5
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.8e-82 310.1 293 64.5
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 3.1e-82 309.3 270 66.3
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 3.1e-82 309.3 295 63.7
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 5.3e-82 308.5 286 62.6
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 2.0e-81 306.6 293 61.1
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 5.9e-81 305.1 364 54.4
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 1.0e-80 304.3 294 62.9
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 1.3e-80 303.9 195 79.0
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.2e-80 303.1 299 61.5
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.1e-78 296.6 193 80.3
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 1.0e-77 294.3 331 55.9
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.0e-77 292.7 223 70.0
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 5.2e-77 292.0 265 66.0
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 8.8e-77 291.2 327 57.2
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 8.3e-75 284.6 228 68.9
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 3.1e-74 282.7 199 75.4
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 7.0e-74 281.6 261 68.2
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 2.0e-73 280.0 321 53.9
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 5.9e-73 278.5 199 74.9
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.7e-72 276.9 284 62.7
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 1.5e-71 273.9 181 76.8
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.8e-70 269.6 204 70.6
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 1.5e-68 263.8 256 62.5
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 1.5e-68 263.8 279 57.0
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 5.7e-68 261.9 304 53.6
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 7.5e-68 261.5 250 62.0
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.3e-67 260.8 256 59.8
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 3.2e-66 256.1 232 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 4.1e-66 255.8 210 65.2
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 7.0e-66 255.0 262 59.5
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.6e-65 253.8 227 64.3
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 3.6e-54 216.1 217 58.5
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 3.6e-54 216.1 181 61.9
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 6.4e-51 205.3 210 57.1
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.3e-48 196.8 194 60.3
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.1e-45 188.0 183 56.8
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 4.4e-36 156.0 107 79.4
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.6e-33 147.5 122 66.4
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 1.6e-33 147.5 287 39.0
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 3.5e-33 146.4 89 80.9
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.0e-32 144.8 281 35.6
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 4.9e-27 125.9 235 37.0
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 4.6e-25 119.4 206 39.8
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 4.3e-23 112.8 151 51.0
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 3.6e-22 109.8 87 63.2
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 1.4e-21 107.8 78 76.9
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.8e-21 107.5 63 87.3
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 5.3e-21 105.9 63 85.7
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 1.8e-13 80.9 211 31.8
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 1.7e-11 74.3 60 66.7


User provided reference genes

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