Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 3.8e-73 278.1 141 100.0
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 4.6e-63 244.6 135 91.9
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 3.9e-62 241.5 135 91.1
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 4.3e-61 238.0 134 91.0
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 1.3e-60 236.5 135 88.9
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 3.6e-60 235.0 135 88.9
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 6.2e-52 207.6 133 81.2
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 9.0e-51 203.8 133 79.7
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 1.2e-50 203.4 135 80.0
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 1.2e-50 203.4 135 79.3
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 1.2e-50 203.4 135 79.3
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 1.2e-50 203.4 135 79.3
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 2.0e-50 202.6 129 81.4
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 2.6e-50 202.2 132 79.5
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 6.4e-49 197.6 132 79.5
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 2.4e-48 195.7 133 78.2
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 2.4e-48 195.7 135 74.8
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 9.3e-48 193.7 129 78.3
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 2.3e-46 189.1 138 74.6
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 7.4e-45 184.1 134 72.4
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.3e-44 183.3 129 74.4
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.1e-44 182.6 129 73.6
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.1e-44 182.6 129 73.6
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 4.8e-44 181.4 129 73.6
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 4.8e-44 181.4 136 72.1
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 1.8e-43 179.5 136 71.3
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 5.3e-43 177.9 127 73.2
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 5.3e-43 177.9 133 69.9
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 2.0e-42 176.0 133 69.2
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 2.6e-42 175.6 142 65.5
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 3.4e-42 175.3 136 68.4
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 4.5e-42 174.9 136 66.9
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 5.8e-42 174.5 136 66.9
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 5.8e-42 174.5 136 67.6
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.0e-41 173.7 133 68.4
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 1.0e-41 173.7 136 66.2
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.3e-41 173.3 136 68.4
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 1.7e-41 172.9 136 67.6
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 4.9e-41 171.4 133 67.7
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 6.5e-41 171.0 130 70.0
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 6.5e-41 171.0 136 65.4
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 1.4e-40 169.9 135 64.4
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 4.2e-40 168.3 133 64.7
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.2e-39 166.8 114 75.4
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 2.1e-39 166.0 133 63.2
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 2.1e-39 166.0 135 65.2
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 3.5e-39 165.2 136 64.0
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.5e-39 165.2 136 64.0
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.5e-39 165.2 136 64.0
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 7.9e-39 164.1 140 62.9
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.0e-38 163.7 136 63.2
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.0e-38 163.7 136 63.2
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.3e-38 163.3 141 61.7
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 2.3e-38 162.5 141 61.7
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 5.1e-38 161.4 135 60.0
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 8.7e-38 160.6 129 62.8
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 1.1e-37 160.2 141 61.0
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 3.3e-37 158.7 141 60.3
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.3e-37 158.3 130 63.1
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 5.7e-37 157.9 130 63.1
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 5.7e-37 157.9 129 63.6
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 7.4e-37 157.5 137 61.3
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 9.6e-37 157.1 136 60.3
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 9.6e-37 157.1 133 62.4
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 2.1e-36 156.0 133 60.9
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 2.8e-36 155.6 134 59.7
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 3.7e-36 155.2 139 59.7
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 4.8e-36 154.8 131 60.3
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 1.4e-35 153.3 133 60.2
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 1.8e-35 152.9 137 59.9
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 1.8e-35 152.9 136 58.1
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 6.9e-35 151.0 137 59.1
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 9.0e-35 150.6 138 62.3
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 1.5e-34 149.8 136 58.8
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 1.5e-34 149.8 134 59.0
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 2.6e-34 149.1 137 58.4
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 3.4e-34 148.7 135 57.8
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 4.5e-34 148.3 133 58.6
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 4.5e-34 148.3 136 58.8
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 4.5e-34 148.3 136 59.6
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 7.6e-34 147.5 133 59.4
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 7.6e-34 147.5 133 59.4
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 7.6e-34 147.5 133 59.4
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.0e-33 147.1 136 57.4
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 1.7e-33 146.4 133 59.4
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 2.2e-33 146.0 130 59.2
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 5.0e-33 144.8 136 58.8
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 6.5e-33 144.4 135 57.8
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 8.5e-33 144.1 136 58.8
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 8.5e-33 144.1 136 57.4
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 8.5e-33 144.1 136 57.4
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 1.9e-32 142.9 136 58.1
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 4.2e-32 141.7 120 57.5
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 5.5e-32 141.4 140 57.1
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 7.2e-32 141.0 134 55.2
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 9.3e-32 140.6 134 56.7
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 1.2e-31 140.2 136 55.1
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.2e-31 140.2 136 56.6
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 2.7e-31 139.0 136 56.6
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 3.6e-31 138.7 136 52.9
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 7.9e-31 137.5 136 55.1
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 1.0e-30 137.1 141 56.0
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 1.8e-30 136.3 129 55.8
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 1.8e-30 136.3 119 60.5
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 8.7e-30 134.0 129 55.8
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 1.1e-29 133.7 138 50.7
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 2.5e-29 132.5 133 54.9
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 6.3e-28 127.9 78 84.6
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 4.5e-26 121.7 129 54.3
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 3.6e-23 112.1 137 45.3
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.1e-21 107.1 135 45.2
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 3.1e-19 99.0 68 69.1
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 4.7e-15 85.1 135 38.5
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 1.4e-14 83.6 89 51.7
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 3.9e-14 82.0 105 40.0
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 5.2e-14 81.6 105 40.0
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 3.2e-08 62.4 49 63.3
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 1.6e-07 60.1 109 35.8
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 4.7e-07 58.5 84 41.7
SGA_v2.0_scaffold3389G54328 Striga asiatica HOM05D006818 ORTHO05D007177 1.0e-06 57.4 46 63.0
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 1.4e-06 57.0 79 41.8


User provided reference genes

Program Settings