Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 2.0e-127 459.1 242 100.0
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.1e-125 453.4 242 98.8
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 1.9e-88 329.7 242 73.6
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 4.3e-85 318.5 242 70.2
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 4.4e-82 308.5 249 70.7
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 2.9e-73 279.3 246 65.4
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 5.4e-72 275.0 253 65.2
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 3.3e-69 265.8 245 64.5
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 1.8e-67 260.0 252 61.1
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 5.3e-67 258.5 245 62.9
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 5.8e-66 255.0 250 63.6
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 5.8e-66 255.0 245 60.4
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 1.7e-65 253.4 254 62.2
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 1.9e-64 250.0 247 61.9
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 1.9e-64 250.0 250 62.0
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 1.9e-64 250.0 249 59.8
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 2.5e-64 249.6 259 60.2
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 2.5e-64 249.6 251 59.0
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 5.5e-64 248.4 251 60.6
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 7.1e-64 248.1 250 62.0
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 2.1e-63 246.5 245 59.6
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 2.7e-63 246.1 253 60.1
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 6.0e-63 245.0 267 57.3
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 6.0e-63 245.0 252 60.7
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.0e-62 244.2 204 68.1
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.3e-62 243.8 250 58.8
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 2.3e-62 243.0 245 58.8
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 3.9e-62 242.3 250 58.0
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 3.9e-62 242.3 249 58.6
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 1.5e-61 240.4 273 56.4
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 1.5e-61 240.4 255 59.6
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 7.4e-61 238.0 252 57.9
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 7.4e-61 238.0 246 60.2
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 3.7e-60 235.7 252 58.3
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 8.2e-60 234.6 253 56.9
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 1.4e-59 233.8 249 56.2
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.4e-59 233.8 255 58.0
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 4.1e-59 232.3 256 59.4
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 4.1e-59 232.3 191 68.6
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 6.9e-59 231.5 242 57.0
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 6.9e-59 231.5 257 58.0
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 9.0e-59 231.1 246 58.5
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 1.2e-58 230.7 251 58.2
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 1.5e-58 230.3 293 52.2
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 2.0e-58 229.9 242 57.9
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 5.8e-58 228.4 249 55.8
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 7.6e-58 228.0 246 58.1
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.7e-57 226.9 193 67.4
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.2e-57 226.5 253 57.3
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 2.2e-57 226.5 253 57.3
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 2.2e-57 226.5 249 55.4
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 2.9e-57 226.1 258 53.9
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 2.9e-57 226.1 253 56.5
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 3.8e-57 225.7 252 57.1
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 5.0e-57 225.3 246 54.9
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 1.4e-56 223.8 244 57.8
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 1.9e-56 223.4 271 53.9
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 1.9e-56 223.4 252 55.2
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 1.9e-56 223.4 249 56.2
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 7.2e-56 221.5 244 57.0
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 9.3e-56 221.1 244 57.4
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 9.3e-56 221.1 245 54.7
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 1.2e-55 220.7 244 56.6
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 1.6e-55 220.3 243 55.1
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 2.7e-55 219.5 258 52.7
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.8e-54 216.9 244 55.7
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 3.0e-54 216.1 248 56.5
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 3.0e-54 216.1 256 52.7
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 5.1e-54 215.3 249 55.4
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 6.7e-54 214.9 244 55.3
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 1.9e-53 213.4 203 62.1
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 2.5e-53 213.0 249 55.4
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 2.5e-53 213.0 183 64.5
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 7.4e-53 211.5 247 53.8
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 2.2e-52 209.9 248 55.2
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 2.8e-52 209.5 247 55.5
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 8.2e-52 208.0 258 54.3
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 1.1e-51 207.6 242 55.0
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 2.4e-51 206.5 247 54.3
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 2.4e-51 206.5 260 54.2
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 1.2e-50 204.1 247 53.8
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 1.2e-50 204.1 247 53.8
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 1.5e-50 203.8 247 53.8
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 1.5e-50 203.8 136 77.2
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 2.0e-50 203.4 245 52.7
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 2.6e-50 203.0 222 56.8
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.4e-50 202.6 207 59.4
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 7.7e-50 201.4 284 49.6
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 2.9e-49 199.5 246 50.4
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 7.2e-48 194.9 226 55.8
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 7.2e-48 194.9 238 54.2
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 2.1e-47 193.4 249 51.0
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 2.7e-47 193.0 223 55.2
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 7.9e-47 191.4 262 49.6
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 1.1e-45 187.6 238 52.5
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 1.5e-45 187.2 238 52.5
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 2.0e-45 186.8 238 52.1
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 1.3e-44 184.1 254 49.6
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 2.2e-44 183.3 278 49.6
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.1e-43 181.0 246 47.6
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 2.4e-43 179.9 134 72.4
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 2.4e-43 179.9 188 56.9
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.4e-43 179.9 139 71.9
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 4.1e-43 179.1 235 51.9
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 6.9e-43 178.3 139 71.2
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 1.2e-42 177.6 234 49.6
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 2.0e-42 176.8 246 47.6
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 1.7e-41 173.7 244 45.5
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 2.2e-41 173.3 136 69.9
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 2.5e-40 169.9 177 58.2
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 7.2e-40 168.3 186 54.8
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 9.4e-40 167.9 259 46.7
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 1.2e-39 167.5 259 45.9
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 4.8e-36 155.6 247 43.3
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 1.1e-35 154.5 258 46.1
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.8e-35 153.7 122 70.5
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 1.0e-30 137.9 255 41.2
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 5.2e-30 135.6 170 52.9
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 1.1e-29 134.4 135 58.5
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 3.3e-29 132.9 193 48.2
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 1.1e-24 117.9 154 52.6
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 8.0e-23 111.7 75 78.7
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 4.4e-21 105.9 174 45.4
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.8e-19 100.5 172 41.3
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 3.1e-19 99.8 76 69.7
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 6.1e-15 85.5 131 46.6
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 3.0e-14 83.2 123 44.7
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 5.2e-14 82.4 219 33.8
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 5.9e-10 68.9 220 30.5
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 1.7e-09 67.4 101 44.6
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 2.9e-09 66.6 57 61.4


User provided reference genes

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