Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 0.0e+00 3856.2 1964 100.0
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 0.0e+00 2072.0 2047 57.1
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 0.0e+00 1850.1 2030 52.4
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 0.0e+00 1844.7 2032 53.2
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1394.8 2078 41.7
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1382.9 2070 40.4
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 0.0e+00 1360.9 2069 41.2
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 0.0e+00 1358.6 2096 40.0
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 0.0e+00 1349.7 2113 39.3
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 0.0e+00 1348.2 2061 39.8
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 0.0e+00 1347.8 2071 40.1
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 0.0e+00 1342.4 2072 40.3
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 0.0e+00 1314.7 2008 40.3
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 0.0e+00 1313.5 2032 40.8
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 0.0e+00 1311.6 2089 39.6
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 0.0e+00 1293.1 2117 38.6
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 0.0e+00 1278.1 2122 38.6
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 0.0e+00 1271.9 2099 38.4
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 0.0e+00 1269.6 2051 38.8
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 0.0e+00 1266.9 2080 37.8
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 0.0e+00 1258.8 2064 38.4
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 0.0e+00 1255.4 2126 37.3
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 0.0e+00 1244.6 2040 37.6
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 0.0e+00 1241.1 2115 37.4
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 0.0e+00 1211.8 2035 38.6
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 0.0e+00 1211.4 2084 37.5
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1208.4 2083 37.2
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 0.0e+00 1198.0 2012 38.2
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1190.3 2089 36.9
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 0.0e+00 1185.2 2062 36.8
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 0.0e+00 1184.9 2049 37.1
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 0.0e+00 1181.4 2112 36.6
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 0.0e+00 1172.5 1971 37.7
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 0.0e+00 1164.1 2025 37.5
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 0.0e+00 1162.5 2085 37.3
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 0.0e+00 1157.1 2132 36.0
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 0.0e+00 1142.5 2010 37.1
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1122.8 2141 35.2
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1117.8 2071 36.1
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1117.4 2071 36.1
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 0.0e+00 1116.7 2022 37.0
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 0.0e+00 1115.1 2098 35.6
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 0.0e+00 1091.3 2091 34.5
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 0.0e+00 1089.3 2007 36.6
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1083.9 1990 35.7
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 5.4e-311 1072.0 2017 34.2
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 2.7e-310 1069.7 1729 41.2
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 5.9e-310 1068.5 2027 35.9
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 1.3e-309 1067.4 2048 34.8
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 3.3e-308 1062.8 2068 33.9
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 3.2e-303 1046.2 2098 35.1
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 1.0e-301 1041.2 1664 39.4
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 1.9e-300 1036.9 1388 44.9
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 9.5e-300 1034.6 2067 34.2
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 2.8e-299 1033.1 2090 34.3
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 1.3e-296 1024.2 2050 34.2
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 3.0e-293 1013.1 2044 34.0
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 1.9e-292 1010.4 2095 34.0
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 1.5e-289 1000.7 2081 34.2
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 2.6e-289 1000.0 1954 35.4
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 1.7e-288 997.3 2095 33.7
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 2.2e-288 996.9 2077 33.8
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 3.9e-285 986.1 2056 33.7
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 7.3e-284 981.9 2067 33.1
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 9.6e-284 981.5 2032 33.6
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 4.2e-279 966.1 2043 34.0
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 4.2e-279 966.1 2069 33.5
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 6.0e-278 962.2 2018 33.5
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 5.1e-277 959.1 2056 32.8
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 1.6e-275 954.1 2032 33.6
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 5.3e-274 949.1 2005 33.0
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 1.0e-264 918.3 2061 33.2
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 6.0e-262 909.1 2008 33.0
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 1.8e-261 907.5 2011 32.4
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 5.1e-261 906.0 2091 32.7
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 6.3e-259 899.0 2013 32.3
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 1.2e-257 894.8 2008 32.1
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 4.5e-257 892.9 2015 32.5
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 1.6e-254 884.4 2013 32.4
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 1.6e-254 884.4 2013 32.4
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 2.1e-254 884.0 2059 31.8
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 2.4e-250 870.5 2089 31.6
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 1.5e-244 851.3 1995 31.5
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 3.7e-243 846.7 1517 36.1
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 8.5e-240 835.5 1966 32.1
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 2.7e-238 830.5 2147 30.9
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 2.7e-222 777.3 1604 34.5
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 5.7e-220 769.6 1499 34.1
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 2.9e-216 757.3 1678 33.5
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 9.8e-204 715.7 2045 29.9
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 4.6e-201 706.8 2000 29.6
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 2.6e-172 611.3 1633 30.1
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 6.0e-169 600.1 1439 32.2
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 7.3e-167 593.2 1060 35.2
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 1.2e-145 522.7 1969 25.5
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 1.1e-114 419.9 771 35.7
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-112 413.3 761 37.1
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.4e-112 412.9 678 39.4
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 2.6e-111 408.7 1267 27.7
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 4.7e-105 387.9 503 44.9
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 7.0e-93 347.4 2114 22.4
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 1.2e-92 346.7 2263 22.6
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 1.0e-88 333.6 974 29.1
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 6.4e-86 324.3 390 50.3
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 1.2e-84 320.1 2137 21.7
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 2.4e-77 295.8 633 35.9
Dinv04971 Davidia involucrata HOM05D004890 ORTHO05D005869 1.6e-73 283.1 303 50.8
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 1.9e-66 259.6 1163 24.8
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 8.1e-65 254.2 1861 21.8
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 5.1e-59 235.0 585 30.9
Ah.01g022440 Amaranthus hybridus HOM05D004890 ORTHO05D005869 1.1e-48 200.7 395 29.6
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 2.4e-48 199.5 697 27.5
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 5.3e-48 198.4 507 33.1
SEGI_38665 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 1.1e-37 164.1 715 24.2
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 2.4e-37 162.9 425 30.4
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 3.0e-27 129.4 240 35.0
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 7.4e-26 124.8 146 44.5
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 1.4e-24 120.6 164 38.4
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 4.1e-24 119.0 289 31.1
RcHm_v2.0_Chr6g0245361 Rosa chinensis HOM05D004890 ORTHO05D005869 4.5e-23 115.5 159 41.5
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 5.9e-23 115.2 183 36.1
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 1.7e-22 113.6 96 61.5
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 3.8e-22 112.5 106 49.1
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 5.7e-18 98.6 72 63.9
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 2.2e-17 96.7 65 66.2
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 3.7e-17 95.9 65 66.2
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 3.7e-17 95.9 65 66.2
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 8.2e-17 94.7 75 60.0
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 9.1e-16 91.3 102 45.1
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 2.6e-15 89.7 299 27.8
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 5.9e-15 88.6 75 57.3
RcHm_v2.0_Chr6g0245541 Rosa chinensis HOM05D004890 ORTHO05D005869 1.0e-14 87.8 121 39.7
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 2.2e-14 86.7 312 25.3
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 9.4e-13 81.3 80 51.2
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 1.2e-12 80.9 92 46.7
MD10G1117500 Malus domestica HOM05D004890 ORTHO05D005869 1.8e-11 77.0 312 26.6
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 1.1e-10 74.3 73 47.9
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 2.8e-09 69.7 138 35.5
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 2.8e-09 69.7 81 42.0
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 3.7e-09 69.3 112 36.6
RcHm_v2.0_Chr6g0244931 Rosa chinensis HOM05D004890 ORTHO05D005869 4.5e-07 62.4 71 42.3


User provided reference genes

Program Settings