Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.1e-244 848.6 427 100.0
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 4.7e-236 820.8 426 97.2
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 4.5e-170 601.7 435 70.1
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 8.5e-169 597.4 427 72.1
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 2.8e-164 582.4 478 65.9
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 8.8e-142 507.7 400 64.0
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.3e-141 505.8 431 61.0
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 1.3e-140 503.8 432 61.1
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.8e-140 502.7 431 60.6
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 6.3e-140 501.5 432 62.5
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 3.1e-139 499.2 398 64.6
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 4.1e-139 498.8 394 63.2
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 2.0e-138 496.5 360 68.6
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 4.5e-138 495.4 360 68.3
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 4.5e-138 495.4 427 61.8
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 5.9e-138 495.0 426 61.3
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 7.7e-138 494.6 428 60.7
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.0e-137 494.2 427 60.2
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 1.3e-137 493.8 434 60.4
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 1.7e-137 493.4 425 59.8
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 2.2e-137 493.0 442 60.6
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 6.5e-137 491.5 428 60.0
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 6.5e-137 491.5 356 68.8
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 1.5e-136 490.3 426 59.4
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 2.5e-136 489.6 377 64.5
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 3.2e-136 489.2 444 59.2
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 7.2e-136 488.0 349 67.0
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 7.2e-136 488.0 364 64.8
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 9.4e-136 487.6 426 58.7
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 9.4e-136 487.6 426 61.5
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 1.2e-135 487.3 344 68.6
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 1.2e-135 487.3 432 60.0
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 4.7e-135 485.3 427 58.3
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 6.1e-135 485.0 432 61.1
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 6.1e-135 485.0 425 59.1
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 1.0e-134 484.2 426 58.9
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 1.0e-134 484.2 349 66.2
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.4e-134 483.8 430 60.0
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.8e-134 483.4 423 60.0
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 2.3e-134 483.0 349 67.6
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.3e-134 483.0 426 58.7
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 5.2e-134 481.9 381 64.3
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 6.8e-134 481.5 436 58.3
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 6.8e-134 481.5 349 66.2
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 8.8e-134 481.1 369 66.1
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 1.2e-133 480.7 427 59.0
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.5e-133 480.3 397 62.5
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 2.0e-133 479.9 437 59.7
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 4.4e-133 478.8 447 55.7
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 5.7e-133 478.4 403 61.8
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 7.5e-133 478.0 405 61.2
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 1.3e-132 477.2 379 62.3
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 3.7e-132 475.7 397 62.7
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 3.7e-132 475.7 349 65.3
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 3.7e-132 475.7 396 62.1
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 6.3e-132 474.9 345 67.0
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 3.1e-131 472.6 427 59.3
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 4.1e-131 472.2 396 62.4
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 7.0e-131 471.5 441 57.6
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 9.1e-131 471.1 423 57.4
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 2.7e-130 469.5 393 61.6
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.5e-128 463.0 427 57.1
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 3.3e-128 462.6 392 60.7
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 3.3e-128 462.6 346 66.2
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 1.2e-127 460.7 346 66.5
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 3.6e-127 459.1 430 57.2
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 1.4e-126 457.2 434 56.5
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 4.0e-126 455.7 439 57.2
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 6.8e-126 454.9 435 58.2
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 8.9e-126 454.5 346 65.6
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 8.9e-126 454.5 330 67.0
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 8.9e-126 454.5 425 56.9
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 5.7e-125 451.8 346 64.2
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 5.7e-125 451.8 471 54.8
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 7.5e-125 451.4 385 59.7
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 7.5e-125 451.4 392 59.4
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 7.5e-125 451.4 332 64.5
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 2.2e-124 449.9 419 56.1
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 3.7e-124 449.1 347 64.3
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 4.9e-124 448.7 345 64.3
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 6.3e-124 448.4 346 64.5
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 1.1e-123 447.6 430 54.9
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 6.6e-121 438.3 358 62.0
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 8.6e-121 438.0 330 61.8
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 1.1e-120 437.6 431 55.2
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 4.3e-120 435.6 324 65.1
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 5.6e-120 435.3 417 55.4
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 1.6e-119 433.7 332 61.4
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 8.0e-119 431.4 428 56.5
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 2.6e-117 426.4 300 68.3
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 1.4e-115 420.6 297 67.0
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 9.2e-115 417.9 372 58.6
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 3.4e-109 399.4 378 55.0
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.4e-107 393.3 282 65.6
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 8.6e-105 384.8 366 55.2
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 2.3e-102 376.7 346 57.8
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 5.6e-96 355.5 343 54.5
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 6.4e-92 342.0 321 52.0
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 7.1e-91 338.6 246 66.7
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 7.8e-90 335.1 385 50.4
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.1e-87 327.0 291 57.7
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 4.8e-87 325.9 308 57.8
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 6.9e-86 322.0 418 47.8
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 9.9e-85 318.2 385 48.3
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 1.4e-83 314.3 361 46.3
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 3.5e-82 309.7 429 45.7
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.6e-79 300.8 281 57.3
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 3.5e-74 283.1 325 48.9
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 5.6e-72 275.8 307 51.8
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 1.8e-70 270.8 315 50.8
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 2.4e-70 270.4 363 40.8
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 1.9e-67 260.8 182 68.7
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 9.3e-67 258.5 175 70.9
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 8.7e-65 251.9 256 55.1
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.5e-64 250.4 256 55.5
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 9.6e-64 248.4 256 54.3
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 1.1e-62 245.0 251 55.4
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 2.6e-61 240.4 196 59.7
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 3.3e-56 223.4 242 45.9
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 4.8e-55 219.5 141 75.9
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 1.4e-54 218.0 135 79.3
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 5.7e-48 196.1 172 57.0
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 9.7e-48 195.3 261 43.3
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 7.9e-42 175.6 243 47.3
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 3.3e-40 170.2 237 43.9
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 4.8e-23 113.2 67 79.1
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 4.8e-23 113.2 135 48.1
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.6e-21 108.2 236 34.3
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 3.5e-21 107.1 95 57.9
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 1.0e-20 105.5 60 81.7
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 1.5e-19 101.7 124 47.6
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.6e-18 98.2 129 45.0
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.4e-17 95.1 251 31.5
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.0e-17 94.0 56 78.6
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 3.0e-17 94.0 54 79.6
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 4.5e-13 80.1 251 25.9
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 2.5e-11 74.3 71 57.7
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 3.6e-10 70.5 77 48.1
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 1.5e-08 65.1 65 50.8
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 1.3e-07 62.0 32 90.6
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 4.1e-06 57.0 105 33.3


User provided reference genes

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