Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.9e-31 137.1 67 100.0
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.9e-31 137.1 67 100.0
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 4.0e-17 90.9 65 60.0
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 4.5e-16 87.4 64 64.1
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 7.6e-16 86.7 65 61.5
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-15 85.1 65 60.0
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.2e-15 85.1 65 60.0
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 3.8e-15 84.3 64 57.8
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 3.8e-15 84.3 64 57.8
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 3.8e-15 84.3 66 54.5
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 4.9e-15 84.0 64 64.1
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 8.4e-15 83.2 64 62.5
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.1e-14 82.8 64 57.8
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 1.1e-14 82.8 64 57.8
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 1.4e-14 82.4 65 61.5
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.9e-14 82.0 65 56.9
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 1.9e-14 82.0 65 56.9
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.9e-14 82.0 67 55.2
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.2e-14 81.3 65 58.5
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.2e-14 81.3 65 58.5
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.2e-14 81.3 64 53.1
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 4.2e-14 80.9 67 53.7
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 4.2e-14 80.9 66 59.1
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 4.2e-14 80.9 65 56.9
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 4.2e-14 80.9 64 60.9
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.5e-14 80.5 64 53.1
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 5.5e-14 80.5 64 53.1
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 7.1e-14 80.1 65 56.9
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 7.1e-14 80.1 67 58.2
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 7.1e-14 80.1 64 56.2
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 9.3e-14 79.7 65 56.9
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.2e-13 79.3 67 53.7
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.2e-13 79.3 65 55.4
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.6e-13 79.0 67 58.2
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.7e-13 78.2 60 60.0
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.7e-13 78.2 60 60.0
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 3.5e-13 77.8 63 57.1
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 3.5e-13 77.8 65 55.4
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 6.0e-13 77.0 62 62.9
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 6.0e-13 77.0 64 51.6
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 6.0e-13 77.0 64 56.2
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.0e-12 76.3 63 52.4
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.0e-12 76.3 65 58.5
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 1.0e-12 76.3 62 62.9
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.0e-12 76.3 64 56.2
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.0e-12 76.3 62 61.3
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.0e-12 76.3 66 54.5
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 1.3e-12 75.9 64 53.1
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 1.3e-12 75.9 62 59.7
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.8e-12 75.5 65 56.9
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.8e-12 75.5 64 57.8
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 2.3e-12 75.1 62 61.3
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 2.3e-12 75.1 62 61.3
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 2.3e-12 75.1 62 61.3
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 2.3e-12 75.1 61 62.3
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 2.3e-12 75.1 63 55.6
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 2.3e-12 75.1 61 60.7
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 2.3e-12 75.1 66 54.5
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 3.0e-12 74.7 62 61.3
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 3.9e-12 74.3 66 54.5
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 3.9e-12 74.3 63 52.4
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 3.9e-12 74.3 63 52.4
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 5.1e-12 73.9 67 52.2
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 5.1e-12 73.9 63 54.0
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 8.7e-12 73.2 60 60.0
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 8.7e-12 73.2 60 60.0
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 1.1e-11 72.8 59 59.3
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.1e-11 72.8 60 61.7
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 1.5e-11 72.4 60 58.3
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.5e-11 72.4 63 49.2
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 1.5e-11 72.4 62 58.1
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.5e-11 72.4 61 55.7
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.5e-11 72.4 61 55.7
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 1.9e-11 72.0 60 58.3
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 1.9e-11 72.0 61 57.4
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.9e-11 72.0 62 58.1
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.9e-11 72.0 62 59.7
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 2.5e-11 71.6 54 63.0
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 2.5e-11 71.6 61 55.7
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.5e-11 71.6 59 57.6
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 2.5e-11 71.6 62 56.5
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 2.5e-11 71.6 63 52.4
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 2.5e-11 71.6 62 54.8
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 3.3e-11 71.2 61 57.4
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 4.3e-11 70.9 61 54.1
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 4.3e-11 70.9 62 59.7
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 5.6e-11 70.5 60 60.0
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 7.4e-11 70.1 54 59.3
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 9.6e-11 69.7 61 59.0
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 9.6e-11 69.7 64 50.0
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.3e-10 69.3 63 52.4
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.6e-10 68.9 62 54.8
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 1.6e-10 68.9 62 53.2
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.1e-10 68.6 54 61.1
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 2.1e-10 68.6 50 58.0
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 2.1e-10 68.6 53 64.2
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 2.1e-10 68.6 53 64.2
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 2.8e-10 68.2 57 57.9
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 2.8e-10 68.2 57 57.9
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 2.8e-10 68.2 66 51.5
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.7e-10 67.8 62 54.8
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.7e-10 67.8 62 54.8
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 3.7e-10 67.8 62 53.2
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.7e-10 67.8 57 56.1
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.7e-10 67.8 54 59.3
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.7e-10 67.8 61 52.5
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 6.2e-10 67.0 62 54.8
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 8.2e-10 66.6 62 53.2
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 8.2e-10 66.6 62 53.2
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 8.2e-10 66.6 62 54.8
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.1e-09 66.2 65 44.6
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.4e-09 65.9 67 49.3
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 1.8e-09 65.5 62 53.2
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.4e-09 65.1 60 51.7
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 2.4e-09 65.1 62 54.8
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.1e-09 64.7 52 59.6
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.1e-09 64.7 52 59.6
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 3.1e-09 64.7 67 47.8
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 3.1e-09 64.7 59 52.5
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 3.1e-09 64.7 51 54.9
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 5.3e-09 63.9 62 54.8
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 5.3e-09 63.9 59 52.5
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 5.3e-09 63.9 59 50.8
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 6.9e-09 63.5 58 53.4
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 9.0e-09 63.2 63 44.4
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 9.0e-09 63.2 51 54.9
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 1.5e-08 62.4 57 56.1
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 2.0e-08 62.0 62 48.4
BcaB01g00445 Brassica carinata HOM05D004166 ORTHO05D004992 2.0e-08 62.0 60 51.7
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 2.0e-08 62.0 67 50.7
BcaB01g00441 Brassica carinata HOM05D004166 ORTHO05D004992 2.6e-08 61.6 60 53.3
BcaB01g00442 Brassica carinata HOM05D004166 ORTHO05D004992 2.6e-08 61.6 60 53.3
C08p27370 Brassica napus HOM05D004166 ORTHO05D004992 2.6e-08 61.6 60 53.3
BolC8t50354H Brassica oleracea HOM05D004166 ORTHO05D004992 5.8e-08 60.5 60 51.7
BraA09t39979Z Brassica rapa HOM05D004166 ORTHO05D004992 5.8e-08 60.5 60 51.7
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 5.8e-08 60.5 61 50.8
AUR62027418 Chenopodium quinoa HOM05D004166 ORTHO05D004992 7.6e-08 60.1 67 44.8
TPR.G4007 Trifolium pratense HOM05D004166 ORTHO05D004992 7.6e-08 60.1 67 46.3
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 1.0e-07 59.7 62 48.4
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 1.0e-07 59.7 62 51.6
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 1.0e-07 59.7 62 53.2
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.0e-07 59.7 54 55.6
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 3.8e-07 57.8 53 56.6
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 3.8e-07 57.8 53 56.6
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 6.5e-07 57.0 62 50.0
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 1.1e-06 56.2 62 45.2
DCAR_016996 Daucus carota HOM05D004166 ORTHO05D004992 1.9e-06 55.5 55 56.4
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.5e-06 55.1 59 47.5
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 7.1e-06 53.5 62 46.8
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 9.3e-06 53.1 62 45.2


User provided reference genes

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