Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 0.0e+00 1296.2 716 100.0
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 0.0e+00 1293.1 716 99.9
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 6.9e-123 445.7 869 43.8
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 1.2e-111 408.3 917 40.8
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.0e-94 352.1 780 39.5
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 2.4e-91 340.9 825 40.1
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.6e-85 320.9 817 38.9
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 5.0e-81 306.6 858 37.1
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 2.8e-76 290.8 833 36.5
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 6.3e-76 289.7 818 37.5
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 1.1e-75 288.9 819 37.9
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 6.5e-73 279.6 828 36.5
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 8.5e-73 279.3 887 34.2
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 2.8e-71 274.2 855 34.6
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 3.0e-70 270.8 864 33.7
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 2.0e-69 268.1 828 34.3
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 5.7e-69 266.5 850 33.9
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 7.3e-64 249.6 858 32.6
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 7.3e-64 249.6 846 32.0
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 9.5e-64 249.2 858 32.6
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 4.7e-63 246.9 813 34.8
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.2e-62 243.4 834 35.4
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.1e-59 235.7 837 34.5
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 9.2e-59 232.6 898 30.4
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 4.6e-58 230.3 876 32.9
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 8.6e-57 226.1 898 33.1
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 2.0e-53 214.9 873 32.0
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 3.4e-53 214.2 771 31.4
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 7.0e-51 206.5 842 29.7
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.6e-50 205.3 879 30.5
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 7.8e-50 203.0 892 29.9
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 2.3e-49 201.4 774 33.2
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 2.3e-49 201.4 774 30.2
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.2e-47 195.7 869 30.1
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.8e-46 191.8 845 31.0
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.1e-46 191.0 862 29.4
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.0e-45 188.3 843 31.1
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.0e-45 188.3 844 30.2
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 4.4e-45 187.2 993 29.5
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 5.8e-45 186.8 748 32.6
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.3e-44 185.7 872 29.2
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.7e-44 184.1 846 30.4
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.7e-44 184.1 846 31.2
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.1e-43 182.6 916 29.0
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 3.2e-43 181.0 861 29.4
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 4.1e-43 180.6 863 29.1
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.6e-42 178.7 951 27.9
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.7e-41 175.3 878 28.8
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 3.0e-41 174.5 820 29.8
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 5.1e-41 173.7 915 27.7
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 8.6e-41 172.9 842 27.4
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.1e-40 172.6 762 29.9
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.1e-40 172.6 828 28.6
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 2.5e-40 171.4 495 34.1
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 5.6e-40 170.2 840 28.9
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 2.8e-39 167.9 336 39.3
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.8e-38 165.2 851 28.9
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 3.1e-38 164.5 858 29.1
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 3.1e-38 164.5 848 28.3
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 5.2e-38 163.7 892 27.9
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 8.9e-38 162.9 838 29.1
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 8.9e-38 162.9 904 27.4
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 1.5e-37 162.2 842 28.9
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 2.0e-37 161.8 755 29.4
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 5.8e-37 160.2 833 28.2
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 5.8e-37 160.2 885 29.0
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.9e-35 155.2 925 26.6
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 3.2e-35 154.5 865 28.4
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 4.1e-35 154.1 831 28.6
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 1.6e-34 152.1 851 27.8
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 3.5e-34 151.0 830 28.4
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 4.6e-34 150.6 930 29.0
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.3e-32 144.4 745 29.5
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 9.6e-32 142.9 856 26.9
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.6e-31 142.1 742 30.9
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 3.6e-31 141.0 856 27.1
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 6.2e-31 140.2 857 28.1
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 1.1e-30 139.4 925 27.4
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.1e-30 137.9 759 29.6
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 3.1e-30 137.9 930 26.5
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 4.0e-30 137.5 778 27.1
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.5e-29 135.6 897 27.5
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 2.0e-29 135.2 255 42.4
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 2.0e-29 135.2 261 38.3
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.7e-28 132.1 763 27.1
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 5.4e-27 127.1 772 27.3
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 5.4e-27 127.1 484 31.0
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.6e-26 125.6 773 28.1
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 2.1e-26 125.2 783 26.7
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.7e-26 124.8 178 48.3
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 1.0e-25 122.9 944 26.8
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 4.3e-24 117.5 785 27.4
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.1e-23 115.2 814 26.8
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 2.1e-23 115.2 797 27.4
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 2.1e-23 115.2 144 51.4
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 2.1e-23 115.2 931 28.4
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 2.1e-23 115.2 222 39.2
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 6.2e-23 113.6 845 26.4
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 2.4e-22 111.7 787 27.1
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 3.1e-22 111.3 744 28.2
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 5.3e-22 110.5 887 25.8
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 1.2e-21 109.4 823 26.0
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 3.4e-21 107.8 174 43.1
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 4.5e-21 107.5 915 25.5
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 9.9e-21 106.3 917 27.2
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.7e-20 105.5 252 38.9
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 8.4e-20 103.2 433 30.7
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.1e-19 102.8 802 27.8
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 4.2e-19 100.9 847 26.6
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 7.1e-19 100.1 946 24.9
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 2.1e-18 98.6 885 24.5
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.7e-18 98.2 868 25.7
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.0e-17 96.3 876 26.4
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 5.1e-17 94.0 646 25.7
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.1e-16 92.8 892 25.3
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 5.6e-16 90.5 881 25.4
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 2.1e-15 88.6 776 26.5
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 3.7e-15 87.8 862 25.6
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 8.1e-15 86.7 838 25.5
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 1.4e-14 85.9 145 42.1
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.8e-14 85.5 890 25.2
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 4.0e-14 84.3 866 26.0
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 6.9e-14 83.6 223 33.6
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 1.5e-13 82.4 269 31.2
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 4.5e-13 80.9 307 29.3
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 5.8e-13 80.5 930 24.7
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 1.7e-12 79.0 461 27.3
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.2e-12 78.6 868 25.2
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 2.9e-12 78.2 801 25.0
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.8e-12 77.8 868 25.0
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 6.4e-12 77.0 82 61.0
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 3.2e-11 74.7 851 24.0
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 4.2e-11 74.3 803 25.8
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 7.1e-11 73.6 134 40.3
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 7.1e-11 73.6 186 33.3
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 1.6e-10 72.4 187 36.4
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 2.7e-10 71.6 196 33.2
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 6.0e-10 70.5 233 32.6
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 6.0e-10 70.5 228 33.3
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 1.0e-09 69.7 286 31.5
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.8e-09 68.9 116 41.4
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 3.0e-09 68.2 198 35.9
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 3.0e-09 68.2 181 36.5
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 3.9e-09 67.8 190 33.7
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.7e-09 67.0 90 44.4
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 8.7e-09 66.6 192 35.9
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 1.1e-08 66.2 186 34.4
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 1.5e-08 65.9 173 37.6
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 1.9e-08 65.5 202 32.2
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 1.9e-08 65.5 174 34.5
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 3.3e-08 64.7 203 32.5
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 7.4e-08 63.5 98 36.7
Nn6g35343 Nelumbo nucifera HOM05D008208 ORTHO05D010143 9.6e-08 63.2 197 33.5
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 9.6e-08 63.2 178 30.9
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 1.3e-07 62.8 261 29.5
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 1.3e-07 62.8 249 30.9
ATR0705G064 Amborella trichopoda HOM05D008208 ORTHO05D010143 1.6e-07 62.4 189 32.8
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 1.6e-07 62.4 142 35.9
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.6e-07 62.4 139 34.5
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 3.7e-07 61.2 385 26.2
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 3.7e-07 61.2 246 31.3
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 3.7e-07 61.2 864 23.7
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 6.2e-07 60.5 385 26.2
Lsat_1_v5_gn_0_18160 Lactuca sativa HOM05D004628 ORTHO05D005166 6.2e-07 60.5 109 40.4
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 6.2e-07 60.5 82 46.3
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 1.1e-06 59.7 242 27.7
vmacro17009 Vaccinium macrocarpon HOM05D008208 ORTHO05D010143 1.1e-06 59.7 252 28.6
PGR102G1678 Punica granatum HOM05D008208 ORTHO05D010143 1.8e-06 58.9 100 38.0
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 2.4e-06 58.5 179 31.8
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 2.4e-06 58.5 192 33.9
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 3.1e-06 58.2 183 33.9
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 6.9e-06 57.0 97 48.5
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 6.9e-06 57.0 322 30.1


User provided reference genes

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