Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.8e-134 481.9 234 100.0
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 2.4e-133 478.8 234 99.1
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.9e-85 319.7 242 66.5
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.9e-82 309.7 234 67.1
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 3.3e-82 308.9 234 66.2
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.3e-81 307.0 240 64.2
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.2e-79 300.4 234 63.7
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.5e-79 300.1 234 64.1
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 2.0e-79 299.7 234 62.4
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.6e-79 299.3 234 62.8
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.6e-79 299.3 234 63.7
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.3e-78 297.0 234 62.0
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 2.9e-78 295.8 234 62.0
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 3.8e-78 295.4 234 61.5
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 3.8e-78 295.4 234 62.0
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 4.9e-78 295.0 234 61.5
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 4.9e-78 295.0 234 62.8
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 6.4e-78 294.7 234 61.5
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.4e-77 293.5 234 62.4
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.4e-77 293.5 234 60.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.4e-77 292.7 234 60.7
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.4e-77 292.7 234 62.8
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.2e-77 292.4 234 62.8
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 3.2e-77 292.4 234 62.8
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 4.2e-77 292.0 234 63.2
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 5.4e-77 291.6 234 61.1
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.1e-77 291.2 234 62.4
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 7.1e-77 291.2 241 62.2
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 9.3e-77 290.8 234 62.0
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 9.3e-77 290.8 234 62.8
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.2e-76 290.4 234 61.5
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.2e-76 290.4 236 63.1
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 4.6e-76 288.5 234 61.5
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 4.6e-76 288.5 234 61.1
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.0e-75 287.3 234 59.4
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.3e-75 287.0 234 62.8
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.3e-75 287.0 234 62.8
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.8e-75 286.6 234 59.8
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 1.8e-75 286.6 234 61.1
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 2.3e-75 286.2 254 57.9
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 3.0e-75 285.8 234 59.8
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 6.7e-75 284.6 234 58.5
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 8.7e-75 284.3 234 59.4
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 8.7e-75 284.3 234 59.4
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.5e-74 283.5 234 60.3
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.9e-74 283.1 234 59.8
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.9e-74 283.1 234 59.8
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 3.3e-74 282.3 234 60.3
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 3.3e-74 282.3 234 59.8
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 3.3e-74 282.3 235 60.0
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.3e-74 282.3 234 60.3
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 5.6e-74 281.6 234 58.5
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 5.6e-74 281.6 234 59.4
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 9.6e-74 280.8 234 57.3
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 9.6e-74 280.8 234 59.8
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.3e-73 280.4 234 58.5
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.3e-73 280.4 234 59.8
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 2.1e-73 279.6 234 59.0
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 2.1e-73 279.6 234 59.0
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 6.2e-73 278.1 234 58.1
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.4e-72 276.9 234 58.1
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.8e-72 276.6 237 57.8
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.4e-72 276.2 234 59.4
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 2.4e-72 276.2 234 58.1
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 3.1e-72 275.8 234 58.1
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.1e-72 275.8 234 59.0
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 3.1e-72 275.8 234 56.8
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 4.0e-72 275.4 234 58.1
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 4.0e-72 275.4 234 59.0
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 6.9e-72 274.6 234 57.7
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.2e-71 273.9 234 57.3
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 2.0e-71 273.1 234 59.0
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 2.6e-71 272.7 234 56.8
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 2.6e-71 272.7 234 56.8
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 4.5e-71 271.9 234 57.3
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 4.5e-71 271.9 235 58.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 7.6e-71 271.2 234 56.8
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 7.6e-71 271.2 234 56.0
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-70 270.4 234 57.3
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.7e-70 270.0 234 57.3
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 3.8e-70 268.9 234 56.8
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 3.8e-70 268.9 234 56.8
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 6.4e-70 268.1 234 56.4
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 6.4e-70 268.1 234 55.6
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 6.4e-70 268.1 212 62.3
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.9e-69 266.5 234 58.1
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 3.2e-69 265.8 205 63.9
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 5.5e-69 265.0 234 56.8
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 5.5e-69 265.0 227 59.0
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 7.1e-69 264.6 234 55.1
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 9.3e-69 264.2 234 55.6
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.6e-68 263.5 234 55.6
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 3.5e-68 262.3 234 54.3
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 6.0e-68 261.5 234 54.3
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 3.9e-67 258.8 234 53.8
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.9e-67 258.8 234 53.4
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 7.4e-66 254.6 234 56.0
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 2.0e-63 246.5 227 55.5
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 4.5e-63 245.4 209 57.9
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 6.5e-62 241.5 207 56.0
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 9.3e-61 237.7 234 53.8
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 4.6e-60 235.3 216 54.2
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 5.1e-59 231.9 234 50.9
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.9e-58 229.9 203 57.6
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 9.6e-58 227.6 205 53.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 4.1e-56 222.2 234 48.7
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 5.3e-56 221.9 191 55.5
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 2.6e-55 219.5 234 48.7
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.3e-54 217.2 195 56.9
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 5.0e-54 215.3 234 42.7
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 2.5e-50 203.0 231 42.4
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 5.7e-50 201.8 234 42.3
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 5.0e-46 188.7 170 57.6
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 2.5e-45 186.4 181 51.4
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 7.2e-45 184.9 127 63.0
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.6e-44 183.7 231 39.0
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 2.6e-42 176.4 137 57.7
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 1.7e-41 173.7 115 64.3
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 3.7e-41 172.6 569 27.2
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 4.8e-41 172.2 122 64.8
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 9.1e-40 167.9 196 42.3
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 2.0e-39 166.8 221 43.9
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 8.5e-38 161.4 169 44.4
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.1e-36 156.8 166 50.0
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 5.2e-35 152.1 142 52.1
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 2.4e-32 143.3 147 53.7
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 3.1e-32 142.9 83 85.5
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 9.1e-32 141.4 179 41.9
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.6e-31 139.8 115 52.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.5e-31 139.0 115 52.2
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 4.2e-29 132.5 99 55.6
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 2.1e-28 130.2 77 84.4
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 6.1e-28 128.6 77 83.1
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 8.0e-28 128.3 125 53.6
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.4e-27 127.5 77 81.8
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.5e-26 124.0 77 80.5
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.5e-26 124.0 77 80.5
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 3.3e-26 122.9 75 78.7
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 3.3e-26 122.9 143 41.3
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 4.4e-26 122.5 77 76.6
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 1.7e-25 120.6 77 77.9
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.2e-23 114.4 77 72.7
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.5e-21 107.5 69 76.8
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 4.2e-21 105.9 72 75.0
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.2e-21 105.1 75 69.3
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 4.0e-19 99.4 102 43.1
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.0e-19 99.4 81 61.7
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 4.4e-18 95.9 83 54.2
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 2.8e-17 93.2 55 70.9
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 2.8e-17 93.2 146 41.8
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 2.8e-17 93.2 56 67.9
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 9.1e-16 88.2 66 63.6
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.5e-13 80.9 55 58.2
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 2.5e-13 80.1 64 57.8
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 7.2e-13 78.6 63 52.4
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 1.2e-10 71.2 227 22.5
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 5.7e-10 68.9 46 73.9
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 2.2e-09 67.0 47 59.6
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 6.3e-09 65.5 61 49.2
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 6.3e-09 65.5 61 52.5
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 2.4e-08 63.5 61 47.5
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.6e-07 60.8 45 68.9
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 4.5e-07 59.3 155 27.1
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.7e-06 57.4 56 53.6
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 2.9e-06 56.6 40 75.0


User provided reference genes

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