Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 1.1e-234 816.2 419 100.0
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 3.0e-118 429.5 432 55.3
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 4.3e-101 372.5 424 51.7
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.1e-96 357.8 428 50.5
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 2.5e-96 356.7 424 49.1
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 7.4e-85 318.5 431 45.9
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 8.5e-81 305.1 433 42.7
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.2e-79 301.2 437 43.5
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 4.0e-78 296.2 439 41.9
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 5.7e-77 292.4 434 42.4
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 4.8e-76 289.3 432 42.4
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 4.8e-76 289.3 441 41.3
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 6.3e-76 288.9 430 42.8
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.4e-75 287.7 432 40.7
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 4.1e-75 286.2 436 40.4
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.2e-74 284.6 432 41.7
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 3.5e-74 283.1 431 42.2
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.5e-74 283.1 444 42.8
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.7e-73 280.8 436 39.9
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.7e-73 280.8 436 39.7
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 5.0e-73 279.3 429 42.0
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.1e-72 278.1 436 39.7
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.5e-72 277.7 433 40.6
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 2.5e-72 276.9 432 43.1
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 2.1e-71 273.9 430 40.2
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 2.7e-71 273.5 431 41.3
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 6.1e-71 272.3 432 39.6
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 2.3e-70 270.4 426 39.0
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.0e-70 270.0 441 41.7
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.0e-69 267.3 431 40.1
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.6e-69 266.9 432 41.4
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 5.7e-69 265.8 431 39.9
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 5.7e-69 265.8 431 40.4
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.3e-68 264.6 433 40.9
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 4.8e-68 262.7 436 41.1
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 2.4e-67 260.4 441 40.6
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 5.9e-66 255.8 432 39.4
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.0e-65 255.0 432 39.4
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.3e-65 254.6 432 38.9
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.3e-65 254.6 432 39.1
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.3e-65 253.8 433 39.0
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.9e-65 253.4 432 39.1
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.8e-65 253.1 396 41.9
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 9.5e-64 248.4 430 37.9
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 9.5e-64 248.4 442 37.6
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.2e-63 248.1 429 38.5
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 1.6e-63 247.7 444 37.2
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.0e-62 245.0 429 38.9
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.8e-62 244.2 437 39.4
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 8.9e-62 241.9 352 41.2
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.2e-61 241.5 355 43.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 3.4e-61 240.0 352 40.9
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 5.7e-61 239.2 431 38.3
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 1.3e-60 238.0 400 39.2
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.7e-60 237.7 431 37.1
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.7e-60 237.7 426 37.1
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 2.8e-60 236.9 442 38.2
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 2.8e-60 236.9 435 37.5
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 3.7e-60 236.5 431 38.5
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 6.3e-60 235.7 427 40.5
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 4.1e-59 233.0 431 36.2
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.2e-58 231.5 435 35.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.2e-58 231.5 433 37.2
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.6e-58 231.1 430 35.8
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 2.7e-58 230.3 434 36.9
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 3.5e-58 229.9 435 37.9
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 5.9e-58 229.2 437 36.6
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.0e-57 228.4 430 39.3
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.7e-57 227.6 429 36.8
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 2.3e-57 227.3 438 37.7
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.5e-56 224.6 396 39.9
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 5.6e-56 222.6 352 39.5
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.3e-56 222.2 434 37.3
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.3e-56 222.2 434 37.3
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 4.7e-55 219.5 429 35.2
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.0e-54 218.4 422 36.3
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.4e-54 218.0 333 40.5
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.8e-54 217.6 430 35.8
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 8.9e-54 215.3 439 35.8
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.6e-53 213.8 442 35.7
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 4.4e-53 213.0 435 36.6
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 5.8e-53 212.6 348 38.8
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.3e-52 211.5 195 61.5
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.3e-52 211.5 430 34.2
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 4.9e-52 209.5 433 35.8
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 8.3e-52 208.8 429 38.0
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.1e-51 208.4 433 35.6
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.4e-51 208.0 380 39.5
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.2e-51 206.8 321 41.7
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 3.2e-51 206.8 351 40.2
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 4.1e-51 206.5 434 35.3
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 8.6e-49 198.7 442 36.9
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.5e-48 198.0 438 36.1
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 5.6e-48 196.1 431 37.8
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 5.6e-48 196.1 455 32.7
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.6e-47 194.5 434 35.3
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.1e-47 194.1 384 36.7
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 2.8e-47 193.7 434 33.9
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 4.4e-45 186.4 370 34.1
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 1.7e-44 184.5 423 37.4
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 1.9e-43 181.0 352 33.2
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.4e-43 180.6 410 33.7
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.2e-43 180.3 414 32.9
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.2e-42 178.3 421 32.3
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.0e-41 175.3 416 34.6
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 2.3e-41 174.1 422 31.5
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 5.0e-41 172.9 418 31.8
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 5.0e-41 172.9 423 31.9
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.1e-40 171.8 181 50.3
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 4.3e-40 169.9 427 30.7
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 9.5e-40 168.7 406 31.8
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.2e-39 168.3 420 35.0
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.2e-39 168.3 439 35.3
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 2.8e-39 167.2 425 30.8
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 8.1e-39 165.6 425 30.6
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-38 165.2 236 41.1
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 2.0e-37 161.0 420 28.8
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 3.4e-37 160.2 354 33.9
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 9.9e-37 158.7 269 38.7
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.4e-35 154.8 270 38.9
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.9e-35 154.5 412 29.9
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.7e-34 150.6 381 31.0
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 6.0e-34 149.4 422 30.1
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.5e-32 144.1 426 32.2
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 4.0e-30 136.7 316 34.2
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 1.5e-29 134.8 384 31.0
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.4e-29 133.7 321 30.2
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.3e-28 131.7 314 30.9
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.2e-26 125.2 319 29.8
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 6.6e-25 119.4 194 39.2
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 8.7e-25 119.0 272 36.8
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 7.3e-24 115.9 167 39.5
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 9.0e-22 109.0 262 32.4
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 3.4e-21 107.1 191 39.3
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-20 105.1 168 40.5
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.3e-20 105.1 168 40.5
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 3.8e-20 103.6 168 39.9
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 3.8e-20 103.6 168 39.9
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 9.3e-19 99.0 159 39.6
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 3.5e-18 97.1 164 40.2
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.0e-17 95.5 295 29.5
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.3e-17 95.1 128 44.5
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 6.2e-15 86.3 394 24.6
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 5.3e-14 83.2 86 52.3
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 4.9e-12 76.6 154 29.9
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.4e-06 58.5 83 39.8
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.0e-06 57.0 60 50.0


User provided reference genes

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