Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G4480 Salvia bowleyana HOM05D001888 ORTHO05D001842 1.9e-76 289.3 165 100.0
SalBow1G3630 Salvia bowleyana HOM05D001888 ORTHO05D001842 1.6e-35 153.3 253 47.0
MBI17_g39342_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 3.2e-15 85.9 83 57.8
MBI17_g46329_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 3.2e-15 85.9 83 57.8
AL7G48290 Arabidopsis lyrata HOM05D001888 ORTHO05D001842 4.2e-15 85.5 167 37.1
MSTRG.1880 Avicennia marina HOM05D001888 ORTHO05D001842 9.3e-15 84.3 71 64.8
THA.LOC104809399 Tarenaya hassleriana HOM05D001888 ORTHO05D001842 1.2e-14 84.0 83 54.2
VMungo0251G0235 Vigna mungo HOM05D001888 ORTHO05D001842 2.7e-14 82.8 84 54.8
Oeu009181.1 Olea europaea HOM05D001888 ORTHO05D001842 4.6e-14 82.0 81 59.3
EL10Ac5g12777 Beta vulgaris HOM05D001888 ORTHO05D001842 7.9e-14 81.3 84 51.2
Dinv38962 Davidia involucrata HOM05D001888 ORTHO05D001842 7.9e-14 81.3 70 64.3
SGA_v2.0_scaffold385G50467 Striga asiatica HOM05D001888 ORTHO05D001842 7.9e-14 81.3 81 56.8
unitig_748.g8099 Utricularia gibba HOM05D001888 ORTHO05D001842 1.0e-13 80.9 84 57.1
MD06G1078600 Malus domestica HOM05D001888 ORTHO05D001842 3.0e-13 79.3 83 55.4
Lalb_Chr05g0224901 Lupinus albus HOM05D001888 ORTHO05D001842 8.7e-13 77.8 85 50.6
Phvul.002G287700 Phaseolus vulgaris HOM05D001888 ORTHO05D001842 8.7e-13 77.8 84 52.4
MSTRG.11997 Avicennia marina HOM05D001888 ORTHO05D001842 1.1e-12 77.4 75 56.0
CSS0033349 Camellia sinensis var. sinensis HOM05D001888 ORTHO05D001842 1.1e-12 77.4 253 32.0
MD14G1099400 Malus domestica HOM05D001888 ORTHO05D001842 1.1e-12 77.4 81 55.6
Dinv35212 Davidia involucrata HOM05D001888 ORTHO05D001842 1.5e-12 77.0 83 53.0
Dinv37661 Davidia involucrata HOM05D001888 ORTHO05D001842 1.5e-12 77.0 68 64.7
CANSAT21G1127 Cannabis sativa HOM05D001888 ORTHO05D001842 1.9e-12 76.6 69 62.3
Migut.A00787 Erythranthe guttata HOM05D001888 ORTHO05D001842 2.5e-12 76.3 69 63.8
Haze_08882 Corylus avellana HOM05D001888 ORTHO05D001842 4.3e-12 75.5 71 57.7
Oeu049551.1 Olea europaea HOM05D001888 ORTHO05D001842 4.3e-12 75.5 69 62.3
THA.LOC104818070 Tarenaya hassleriana HOM05D001888 ORTHO05D001842 5.6e-12 75.1 70 57.1
Atru.chr9.2207 Acer truncatum HOM05D001888 ORTHO05D001842 9.6e-12 74.3 102 49.0
GSVIVG01019782001 Vitis vinifera HOM05D001888 ORTHO05D001842 9.6e-12 74.3 158 36.1
ATR0680G405 Amborella trichopoda HOM05D001888 ORTHO05D001842 1.6e-11 73.6 84 51.2
Ah.12g057230 Amaranthus hybridus HOM05D001888 ORTHO05D001842 2.1e-11 73.2 72 55.6
Lj8A233T58 Lonicera japonica HOM05D001888 ORTHO05D001842 2.8e-11 72.8 73 60.3
Lj4g0006394 Lotus japonicus HOM05D001888 ORTHO05D001842 2.8e-11 72.8 79 51.9
Manes.01G063600 Manihot esculenta HOM05D001888 ORTHO05D001842 2.8e-11 72.8 74 54.1
MBI18_g09027_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 4.8e-11 72.0 85 49.4
Potri.003G124600 Populus trichocarpa HOM05D001888 ORTHO05D001842 6.2e-11 71.6 69 59.4
TWI60G0760 Tripterygium wilfordii HOM05D001888 ORTHO05D001842 6.2e-11 71.6 70 55.7
Rhsim07G0091800 Rhododendron simsii HOM05D001888 ORTHO05D001842 8.1e-11 71.2 69 56.5
arahy.Tifrunner.gnm1.ann1.2U7QKV Arachis hypogaea HOM05D001888 ORTHO05D001842 1.1e-10 70.9 76 51.3
arahy.Tifrunner.gnm1.ann1.SEEZ4U Arachis hypogaea HOM05D001888 ORTHO05D001842 1.1e-10 70.9 76 51.3
unitig_748.g7428 Utricularia gibba HOM05D001888 ORTHO05D001842 1.4e-10 70.5 135 40.7
BcaB06g27601 Brassica carinata HOM05D001888 ORTHO05D001842 1.8e-10 70.1 81 45.7
CiPaw.12G095000 Carya illinoinensis HOM05D001888 ORTHO05D001842 1.8e-10 70.1 71 53.5
Migut.E01108 Erythranthe guttata HOM05D001888 ORTHO05D001842 1.8e-10 70.1 49 73.5
Manes.02G023900 Manihot esculenta HOM05D001888 ORTHO05D001842 1.8e-10 70.1 67 58.2
Duzib068G0855 Durio zibethinus HOM05D001888 ORTHO05D001842 2.4e-10 69.7 64 59.4
Nitab4.5_0001356g0050 Nicotiana tabacum HOM05D001888 ORTHO05D001842 2.4e-10 69.7 68 58.8
Nitab4.5_0009051g0010 Nicotiana tabacum HOM05D001888 ORTHO05D001842 2.4e-10 69.7 68 58.8
Sabra03G0088100 Salix brachista HOM05D001888 ORTHO05D001842 3.1e-10 69.3 69 58.0
Gohir.A12G226900 Gossypium hirsutum HOM05D001888 ORTHO05D001842 4.0e-10 68.9 68 54.4
Gohir.D12G229250 Gossypium hirsutum HOM05D001888 ORTHO05D001842 4.0e-10 68.9 68 54.4
Gorai.008G245500 Gossypium raimondii HOM05D001888 ORTHO05D001842 4.0e-10 68.9 68 54.4
SGA_v2.0_scaffold144G35956 Striga asiatica HOM05D001888 ORTHO05D001842 4.0e-10 68.9 61 63.9
CAN.G859.17 Capsicum annuum HOM05D001888 ORTHO05D001842 5.3e-10 68.6 68 57.4
Sed0024649 Sechium edule HOM05D001888 ORTHO05D001842 5.3e-10 68.6 67 56.7
vmacro13947 Vaccinium macrocarpon HOM05D001888 ORTHO05D001842 5.3e-10 68.6 69 55.1
BcaC08g44511 Brassica carinata HOM05D001888 ORTHO05D001842 9.0e-10 67.8 81 43.2
Glyma.05G206100 Glycine max HOM05D001888 ORTHO05D001842 9.0e-10 67.8 70 55.7
ECA233G5260 Erigeron canadensis HOM05D001888 ORTHO05D001842 1.2e-09 67.4 113 40.7
Hund11487 Selenicereus undatus HOM05D001888 ORTHO05D001842 1.2e-09 67.4 70 51.4
Ah.02g116510 Amaranthus hybridus HOM05D001888 ORTHO05D002850 2.0e-09 66.6 77 48.1
A02p11920 Brassica napus HOM05D001888 ORTHO05D001842 2.0e-09 66.6 140 35.7
Solyc08g080780.4 Solanum lycopersicum HOM05D001888 ORTHO05D001842 2.0e-09 66.6 68 54.4
Sopen08g029100 Solanum pennellii HOM05D001888 ORTHO05D001842 2.0e-09 66.6 68 54.4
arahy.Tifrunner.gnm1.ann1.BHNX0U Arachis hypogaea HOM05D001888 ORTHO05D001842 2.6e-09 66.2 75 52.0
arahy.Tifrunner.gnm1.ann1.TJC463 Arachis hypogaea HOM05D001888 ORTHO05D001842 2.6e-09 66.2 75 52.0
CSS0014564 Camellia sinensis var. sinensis HOM05D001888 ORTHO05D001842 2.6e-09 66.2 59 62.7
CSS0016128 Camellia sinensis var. sinensis HOM05D001888 ORTHO05D001842 2.6e-09 66.2 59 62.7
Medtr0415s0020 Medicago truncatula HOM05D001888 ORTHO05D001842 2.6e-09 66.2 75 50.7
Ciclev10018577m.g Citrus clementina HOM05D001888 ORTHO05D001842 3.4e-09 65.9 67 56.7
Hma1.2p1_1943F.1_g308520 Hydrangea macrophylla HOM05D001888 ORTHO05D001842 3.4e-09 65.9 67 59.7
Lalb_Chr09g0321091 Lupinus albus HOM05D001888 ORTHO05D001842 3.4e-09 65.9 67 58.2
Thecc.03G275900 Theobroma cacao HOM05D001888 ORTHO05D001842 4.5e-09 65.5 66 56.1
Medtr8g097350 Medicago truncatula HOM05D001888 ORTHO05D001842 5.8e-09 65.1 74 50.0
Sabra01G0080700 Salix brachista HOM05D001888 ORTHO05D001842 5.8e-09 65.1 72 50.0
BraA04t17078Z Brassica rapa HOM05D001888 ORTHO05D001842 7.6e-09 64.7 134 35.1
Medtr5g010520 Medicago truncatula HOM05D001888 ORTHO05D001842 7.6e-09 64.7 70 51.4
Sp2g01220 Schrenkiella parvula HOM05D001888 ORTHO05D001842 7.6e-09 64.7 69 50.7
A04p14180 Brassica napus HOM05D001888 ORTHO05D001842 1.0e-08 64.3 134 35.1
ClCG01G002910 Citrullus lanatus HOM05D001888 ORTHO05D001842 1.0e-08 64.3 69 52.2
MELO3C016346.2 Cucumis melo HOM05D001888 ORTHO05D001842 1.0e-08 64.3 69 55.1
MELO3C005655.2 Cucumis melo HOM05D001888 ORTHO05D001842 1.3e-08 63.9 69 52.2
PGSC0003DMG400012221 Solanum tuberosum HOM05D001888 ORTHO05D001842 1.3e-08 63.9 67 52.2
AUR62010611 Chenopodium quinoa HOM05D001888 ORTHO05D001842 1.7e-08 63.5 67 50.7
BcaC02g08981 Brassica carinata HOM05D001888 ORTHO05D001842 2.9e-08 62.8 156 32.7
C04p48220 Brassica napus HOM05D001888 ORTHO05D001842 2.9e-08 62.8 156 32.7
BolC4t26414H Brassica oleracea HOM05D001888 ORTHO05D001842 2.9e-08 62.8 156 32.7
CsaV3_5G002990 Cucumis sativus L. HOM05D001888 ORTHO05D001842 2.9e-08 62.8 66 53.0
Potri.001G106700 Populus trichocarpa HOM05D001888 ORTHO05D001842 2.9e-08 62.8 69 50.7
PGR042G3805 Punica granatum HOM05D001888 ORTHO05D001842 2.9e-08 62.8 108 41.7
ClCG07G008010 Citrullus lanatus HOM05D001888 ORTHO05D001842 3.8e-08 62.4 157 34.4
Gohir.D03G152400 Gossypium hirsutum HOM05D001888 ORTHO05D001842 3.8e-08 62.4 72 48.6
Gohir.D08G199200 Gossypium hirsutum HOM05D001888 ORTHO05D001842 3.8e-08 62.4 49 69.4
Gorai.003G160000 Gossypium raimondii HOM05D001888 ORTHO05D001842 3.8e-08 62.4 72 48.6
Lsat_1_v5_gn_3_7740 Lactuca sativa HOM05D001888 ORTHO05D001842 3.8e-08 62.4 108 39.8
Nn1g01461 Nelumbo nucifera HOM05D001888 ORTHO05D001842 4.9e-08 62.0 67 52.2
VMungo1215G2968 Vigna mungo HOM05D001888 ORTHO05D001842 4.9e-08 62.0 68 54.4
CiPaw.11G138000 Carya illinoinensis HOM05D001888 ORTHO05D001842 6.5e-08 61.6 73 49.3
Gohir.A03G015600 Gossypium hirsutum HOM05D001888 ORTHO05D001842 6.5e-08 61.6 73 47.9
SGA_v2.0_scaffold253G45119 Striga asiatica HOM05D001888 ORTHO05D001842 6.5e-08 61.6 76 44.7
TPR.G6640 Trifolium pratense HOM05D001888 ORTHO05D001842 6.5e-08 61.6 68 52.9
TWI81G0663 Tripterygium wilfordii HOM05D001888 ORTHO05D001842 6.5e-08 61.6 65 52.3
Glyma.08G013000 Glycine max HOM05D001888 ORTHO05D001842 8.4e-08 61.2 67 53.7
Lj8C25T5 Lonicera japonica HOM05D001888 ORTHO05D001842 8.4e-08 61.2 93 44.1
Lalb_Chr16g0389871 Lupinus albus HOM05D001888 ORTHO05D001842 8.4e-08 61.2 111 38.7
BcaC03g14546 Brassica carinata HOM05D001888 ORTHO05D001842 1.1e-07 60.8 80 47.5
Ca_17547_v3 Cicer arietinum L. HOM05D001888 ORTHO05D001842 1.1e-07 60.8 72 47.2
CsaV3_4G006030 Cucumis sativus L. HOM05D001888 ORTHO05D001842 1.1e-07 60.8 149 36.2
QL12p018168 Quercus lobata HOM05D001888 ORTHO05D001842 1.1e-07 60.8 66 47.0
BraA09t37011Z Brassica rapa HOM05D001888 ORTHO05D001842 1.4e-07 60.5 73 49.3
Lj2A188T36 Lonicera japonica HOM05D001888 ORTHO05D001842 1.4e-07 60.5 61 52.5
Phvul.002G155900 Phaseolus vulgaris HOM05D001888 ORTHO05D001842 1.4e-07 60.5 68 52.9
Sc01g0009450 Simmondsia chinensis HOM05D001888 ORTHO05D001842 1.4e-07 60.5 67 50.7
Aa31LG9G700 Aethionema arabicum HOM05D001888 ORTHO05D001842 1.9e-07 60.1 85 40.0
Prupe.5G096300 Prunus persica HOM05D001888 ORTHO05D001842 1.9e-07 60.1 177 32.8
CARHR048110 Cardamine hirsuta HOM05D001888 ORTHO05D001842 2.5e-07 59.7 69 46.4
Sed0026333 Sechium edule HOM05D001888 ORTHO05D001842 2.5e-07 59.7 66 54.5
TAR636G2336 Trochodendron aralioides HOM05D001888 ORTHO05D001842 2.5e-07 59.7 59 57.6
Eucgr.D01870 Eucalyptus grandis HOM05D001888 ORTHO05D001842 3.2e-07 59.3 177 31.1
AT5G41140 Arabidopsis thaliana HOM05D001888 ORTHO05D001842 4.2e-07 58.9 73 42.5
FvH4_5g02001 Fragaria vesca HOM05D001888 ORTHO05D001842 4.2e-07 58.9 49 63.3
FAN04G2882 Fragaria x ananassa HOM05D001888 ORTHO05D001842 4.2e-07 58.9 49 63.3
FAN08G2193 Fragaria x ananassa HOM05D001888 ORTHO05D001842 4.2e-07 58.9 49 63.3
FAN18G1824 Fragaria x ananassa HOM05D001888 ORTHO05D001842 4.2e-07 58.9 49 63.3
Psat7g035000 Pisum sativum HOM05D001888 ORTHO05D001842 4.2e-07 58.9 49 63.3
RcHm_v2.0_Chr7g0198351 Rosa chinensis HOM05D001888 ORTHO05D001842 4.2e-07 58.9 59 59.3
SEGI_12183 Sequoiadendron giganteum HOM05D001888 ORTHO05D001842 4.2e-07 58.9 85 43.5
SEGI_22593 Sequoiadendron giganteum HOM05D001888 ORTHO05D001842 4.2e-07 58.9 85 43.5
vmacro11308 Vaccinium macrocarpon HOM05D001888 ORTHO05D001842 4.2e-07 58.9 72 47.2
GSVIVG01028978001 Vitis vinifera HOM05D001888 ORTHO05D001842 4.2e-07 58.9 66 48.5
AL2G11850 Arabidopsis lyrata HOM05D001888 ORTHO05D001842 5.5e-07 58.5 68 47.1
Peaxi162Scf00714g00016 Petunia axillaris HOM05D001888 ORTHO05D001842 5.5e-07 58.5 43 67.4
Psat0s5147g0040 Pisum sativum HOM05D001888 ORTHO05D001842 5.5e-07 58.5 113 36.3
AT1G63300 Arabidopsis thaliana HOM05D001888 ORTHO05D001842 7.1e-07 58.2 68 47.1
Ciclev10004257m.g Citrus clementina HOM05D001888 ORTHO05D001842 7.1e-07 58.2 49 61.2
DCAR_004646 Daucus carota HOM05D000683 ORTHO05D001842 7.1e-07 58.2 113 36.3
Gorai.004G210000 Gossypium raimondii HOM05D001888 ORTHO05D001842 7.1e-07 58.2 66 53.0
Sed0020347 Sechium edule HOM05D001888 ORTHO05D001842 7.1e-07 58.2 69 49.3
TAR374G1672 Trochodendron aralioides HOM05D001888 ORTHO05D001842 7.1e-07 58.2 68 48.5
AUR62017256 Chenopodium quinoa HOM05D001888 ORTHO05D001842 9.3e-07 57.8 59 54.2
Aqoxy7G00360 Aquilegia oxysepala HOM05D001888 ORTHO05D001842 1.2e-06 57.4 49 61.2
Zm00001eb220750 Zea mays HOM05D001888 ORTHO05D001842 1.2e-06 57.4 94 41.5
C02p19910 Brassica napus HOM05D001888 ORTHO05D001842 1.6e-06 57.0 79 45.6
Thhalv10027632m.g Eutrema salsugineum HOM05D001888 ORTHO05D001842 1.6e-06 57.0 66 43.9
FAN13G0626 Fragaria x ananassa HOM05D001888 ORTHO05D001842 1.6e-06 57.0 49 63.3
Gohir.A08G180400 Gossypium hirsutum HOM05D001888 ORTHO05D001842 1.6e-06 57.0 70 50.0
Lj2g0025321 Lotus japonicus HOM05D001888 ORTHO05D001842 1.6e-06 57.0 67 49.3
Actinidia27391 Actinidia chinensis HOM05D001888 ORTHO05D001842 2.1e-06 56.6 49 59.2
Sc07g0009660 Simmondsia chinensis HOM05D001888 ORTHO05D001842 2.1e-06 56.6 64 50.0
Carub.0002s0152 Capsella rubella HOM05D001888 ORTHO05D001842 2.7e-06 56.2 66 47.0
Glyma.11G025100 Glycine max HOM05D001888 ORTHO05D001842 2.7e-06 56.2 68 50.0
Potri.012G141200 Populus trichocarpa HOM05D001888 ORTHO05D001842 2.7e-06 56.2 71 45.1
BolC2t08125H Brassica oleracea HOM05D001888 ORTHO05D001842 3.5e-06 55.8 79 44.3
Manes.06G147000 Manihot esculenta HOM05D001888 ORTHO05D001842 3.5e-06 55.8 60 51.7
PSO782G2034 Papaver somniferum HOM05D001888 ORTHO05D001842 3.5e-06 55.8 62 53.2
Potri.015G143800 Populus trichocarpa HOM05D001888 ORTHO05D001842 3.5e-06 55.8 49 57.1
Sabra15G0153500 Salix brachista HOM05D001888 ORTHO05D001842 3.5e-06 55.8 49 57.1
Sp7g00760 Schrenkiella parvula HOM05D001888 ORTHO05D001842 3.5e-06 55.8 66 43.9
SpUn0010_0240 Schrenkiella parvula HOM05D001888 ORTHO05D001842 3.5e-06 55.8 66 43.9
COL.COLO4_14308 Corchorus olitorius HOM05D001888 ORTHO05D001842 4.6e-06 55.5 49 55.1
Eucgr.E00571 Eucalyptus grandis HOM05D001888 ORTHO05D001842 4.6e-06 55.5 95 41.1
Hund14761 Selenicereus undatus HOM05D001888 ORTHO05D001842 4.6e-06 55.5 69 49.3
TPR.G12909 Trifolium pratense HOM05D001888 ORTHO05D001842 4.6e-06 55.5 66 48.5
Zm00001eb044090 Zea mays HOM05D001888 ORTHO05D001842 4.6e-06 55.5 94 40.4
HanXRQChr06g0165741 Helianthus annuus HOM05D001888 ORTHO05D001842 6.0e-06 55.1 79 43.0
Lsat_1_v5_gn_6_87061 Lactuca sativa HOM05D001888 ORTHO05D001842 6.0e-06 55.1 73 46.6
Prupe.2G294200 Prunus persica HOM05D001888 ORTHO05D001842 6.0e-06 55.1 65 50.8
PGR031G1024 Punica granatum HOM05D001888 ORTHO05D001842 6.0e-06 55.1 47 59.6
Thecc.03G176500 Theobroma cacao HOM05D001888 ORTHO05D001842 6.0e-06 55.1 49 55.1
Ca_24560_v3 Cicer arietinum L. HOM05D001888 ORTHO05D001842 7.9e-06 54.7 163 30.1
Oeu021789.1 Olea europaea HOM05D001888 ORTHO05D001842 7.9e-06 54.7 75 41.3


User provided reference genes

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