Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G6715 Salvia bowleyana HOM05D002988 ORTHO05D003479 9.4e-27 122.9 66 100.0
SalBow6G4477 Salvia bowleyana HOM05D002988 ORTHO05D003479 9.4e-27 122.9 66 100.0
Oeu017089.1 Olea europaea HOM05D002988 ORTHO05D003479 4.0e-25 117.5 66 95.5
Cc08_g03550 Coffea canephora HOM05D002988 ORTHO05D003479 2.0e-24 115.2 66 90.9
Hma1.2p1_1645F.1_g295370 Hydrangea macrophylla HOM05D002988 ORTHO05D003479 2.0e-24 115.2 66 89.4
CSS0041130 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 5.7e-24 113.6 66 90.9
GSVIVG01011111001 Vitis vinifera HOM05D002988 ORTHO05D003479 5.7e-24 113.6 66 87.9
Dinv25275 Davidia involucrata HOM05D002988 ORTHO05D003479 7.5e-24 113.2 66 87.9
SalBow8G3553 Salvia bowleyana HOM05D002988 ORTHO05D003479 7.5e-24 113.2 66 90.9
MSTRG.13895 Avicennia marina HOM05D002988 ORTHO05D003479 9.8e-24 112.8 66 87.9
SGA_v2.0_scaffold96G29042 Striga asiatica HOM05D002988 ORTHO05D003479 9.8e-24 112.8 66 89.4
ECA246G1645 Erigeron canadensis HOM05D002988 ORTHO05D003479 1.3e-23 112.5 66 86.4
Lj2C229T12 Lonicera japonica HOM05D002988 ORTHO05D003479 1.3e-23 112.5 64 90.6
Potri.003G097700 Populus trichocarpa HOM05D002988 ORTHO05D003479 1.3e-23 112.5 64 90.6
Cfa012530 Carpinus fangiana HOM05D002988 ORTHO05D003479 2.8e-23 111.3 64 89.1
Cfa012531 Carpinus fangiana HOM05D002988 ORTHO05D003479 2.8e-23 111.3 64 89.1
Duzib205G0674 Durio zibethinus HOM05D002988 ORTHO05D003479 2.8e-23 111.3 64 89.1
Nitab4.5_0002429g0010 Nicotiana tabacum HOM05D002988 ORTHO05D003479 2.8e-23 111.3 66 87.9
vmacro00266 Vaccinium macrocarpon HOM05D002988 ORTHO05D003479 2.8e-23 111.3 66 86.4
Sabra01G0105100 Salix brachista HOM05D002988 ORTHO05D003479 3.7e-23 110.9 63 88.9
Sed0002043 Sechium edule HOM05D002988 ORTHO05D003479 3.7e-23 110.9 64 87.5
Solyc06g066320.3 Solanum lycopersicum HOM05D002988 ORTHO05D003479 4.8e-23 110.5 66 86.4
Sopen06g021700 Solanum pennellii HOM05D002988 ORTHO05D003479 4.8e-23 110.5 66 86.4
PGSC0003DMG400016781 Solanum tuberosum HOM05D002988 ORTHO05D003479 4.8e-23 110.5 66 86.4
CiPaw.11G099100 Carya illinoinensis HOM05D002988 ORTHO05D003479 6.3e-23 110.2 64 87.5
HanXRQChr06g0172711 Helianthus annuus HOM05D002988 ORTHO05D003479 6.3e-23 110.2 66 84.8
Nitab4.5_0001632g0050 Nicotiana tabacum HOM05D002988 ORTHO05D003479 6.3e-23 110.2 66 86.4
Peaxi162Scf00185g01120 Petunia axillaris HOM05D002988 ORTHO05D003479 6.3e-23 110.2 66 86.4
Rhsim11G0032300 Rhododendron simsii HOM05D002988 ORTHO05D003479 6.3e-23 110.2 66 84.8
RcHm_v2.0_Chr7g0212171 Rosa chinensis HOM05D002988 ORTHO05D003479 6.3e-23 110.2 64 87.5
Sed0019870 Sechium edule HOM05D002988 ORTHO05D003479 6.3e-23 110.2 64 85.9
CSS0006732 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 8.3e-23 109.8 66 84.8
Gohir.D03G176600 Gossypium hirsutum HOM05D002988 ORTHO05D003479 8.3e-23 109.8 64 87.5
Gorai.003G185800 Gossypium raimondii HOM05D002988 ORTHO05D003479 8.3e-23 109.8 64 87.5
TAR369G1079 Trochodendron aralioides HOM05D002988 ORTHO05D003479 8.3e-23 109.8 66 84.8
CsaV3_3G048800 Cucumis sativus L. HOM05D002988 ORTHO05D003479 1.1e-22 109.4 64 85.9
Nn2g11139 Nelumbo nucifera HOM05D002988 ORTHO05D003479 1.1e-22 109.4 66 84.8
Prupe.5G026700 Prunus persica HOM05D002988 ORTHO05D003479 1.1e-22 109.4 64 85.9
TAR623G1658 Trochodendron aralioides HOM05D002988 ORTHO05D003479 1.1e-22 109.4 66 83.3
CAN.G474.23 Capsicum annuum HOM05D002988 ORTHO05D003479 1.4e-22 109.0 66 84.8
Gohir.D12G208000 Gossypium hirsutum HOM05D002988 ORTHO05D003479 1.4e-22 109.0 64 85.9
Gorai.008G223500 Gossypium raimondii HOM05D002988 ORTHO05D003479 1.4e-22 109.0 64 85.9
TWI81G0561 Tripterygium wilfordii HOM05D002988 ORTHO05D003479 1.4e-22 109.0 64 87.5
MSTRG.11903 Avicennia marina HOM05D002988 ORTHO05D003479 1.8e-22 108.6 66 86.4
Lj8C320T14 Lonicera japonica HOM05D002988 ORTHO05D003479 1.8e-22 108.6 66 83.3
BcaC05g27239 Brassica carinata HOM05D002988 ORTHO05D003479 2.4e-22 108.2 64 87.5
BcaC05g27241 Brassica carinata HOM05D002988 ORTHO05D003479 2.4e-22 108.2 64 87.5
A09p34060 Brassica napus HOM05D002988 ORTHO05D003479 2.4e-22 108.2 64 87.5
C05p31540 Brassica napus HOM05D002988 ORTHO05D003479 2.4e-22 108.2 64 87.5
BolC5t31878H Brassica oleracea HOM05D002988 ORTHO05D003479 2.4e-22 108.2 64 87.5
BraA09t38952Z Brassica rapa HOM05D002988 ORTHO05D003479 2.4e-22 108.2 64 87.5
CiPaw.12G069000 Carya illinoinensis HOM05D002988 ORTHO05D003479 2.4e-22 108.2 64 85.9
Migut.E01320 Erythranthe guttata HOM05D002988 ORTHO05D003479 2.4e-22 108.2 66 86.4
Potri.001G135900 Populus trichocarpa HOM05D002988 ORTHO05D003479 2.4e-22 108.2 64 87.5
FvH4_5g23250 Fragaria vesca HOM05D002988 ORTHO05D003479 3.1e-22 107.8 64 84.4
FAN04G0340 Fragaria x ananassa HOM05D002988 ORTHO05D003479 3.1e-22 107.8 64 84.4
FAN08G0201 Fragaria x ananassa HOM05D002988 ORTHO05D003479 3.1e-22 107.8 64 84.4
FAN13G1166 Fragaria x ananassa HOM05D002988 ORTHO05D003479 3.1e-22 107.8 64 84.4
FAN18G3031 Fragaria x ananassa HOM05D002988 ORTHO05D003479 3.1e-22 107.8 64 84.4
Gohir.A12G205600 Gossypium hirsutum HOM05D002988 ORTHO05D003479 4.1e-22 107.5 64 84.4
Sp1g27800 Schrenkiella parvula HOM05D002988 ORTHO05D003479 4.1e-22 107.5 64 85.9
TWI60G0749 Tripterygium wilfordii HOM05D002988 ORTHO05D003479 4.1e-22 107.5 64 84.4
CANSAT21G0553 Cannabis sativa HOM05D002988 ORTHO05D003479 5.4e-22 107.1 64 84.4
COL.COLO4_16927 Corchorus olitorius HOM05D002988 ORTHO05D003479 5.4e-22 107.1 62 87.1
Lsat_1_v5_gn_3_20800 Lactuca sativa HOM05D002988 ORTHO05D003479 5.4e-22 107.1 63 84.1
MBI05_g28380_MAGBIO Magnolia biondii HOM05D002988 ORTHO05D003479 5.4e-22 107.1 66 81.8
MD16G1270500 Malus domestica HOM05D002988 ORTHO05D003479 5.4e-22 107.1 64 85.9
HPP92_019444 Vanilla planifolia HOM05D002988 ORTHO05D003479 7.0e-22 106.7 66 80.3
Aqoxy2G02232 Aquilegia oxysepala HOM05D002988 ORTHO05D003479 9.1e-22 106.3 66 81.8
MD06G1038400 Malus domestica HOM05D002988 ORTHO05D003479 9.1e-22 106.3 64 84.4
CSS0026853 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 1.6e-21 105.5 65 86.2
CSS0029527 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 1.6e-21 105.5 65 86.2
Thecc.03G311200 Theobroma cacao HOM05D002988 ORTHO05D003479 1.6e-21 105.5 64 85.9
Thhalv10007423m.g Eutrema salsugineum HOM05D002988 ORTHO05D003479 2.0e-21 105.1 64 82.8
Manes.15G170300 Manihot esculenta HOM05D002988 ORTHO05D003479 2.0e-21 105.1 64 82.8
MELO3C003444.2 Cucumis melo HOM05D002988 ORTHO05D003479 2.7e-21 104.8 61 85.2
AL1G46210 Arabidopsis lyrata HOM05D002988 ORTHO05D003479 3.5e-21 104.4 64 82.8
Carub.0001s3045 Capsella rubella HOM05D002988 ORTHO05D003479 3.5e-21 104.4 64 84.4
Os01g0147200 Oryza sativa ssp. japonica HOM05D002988 ORTHO05D003479 3.5e-21 104.4 64 79.7
PSO063G5812 Papaver somniferum HOM05D002988 ORTHO05D003479 3.5e-21 104.4 64 82.8
PSO339G6723 Papaver somniferum HOM05D002988 ORTHO05D003479 3.5e-21 104.4 64 82.8
THA.LOC104798497 Tarenaya hassleriana HOM05D002988 ORTHO05D003479 3.5e-21 104.4 64 81.2
AT1G32130 Arabidopsis thaliana HOM05D002988 ORTHO05D003479 4.5e-21 104.0 64 82.8
Phvul.002G135200 Phaseolus vulgaris HOM05D002988 ORTHO05D003479 4.5e-21 104.0 64 79.7
Phvul.009G172500 Phaseolus vulgaris HOM05D002988 ORTHO05D003479 4.5e-21 104.0 64 79.7
CARHR031490 Cardamine hirsuta HOM05D002988 ORTHO05D003479 5.9e-21 103.6 64 82.8
Glyma.01G012500 Glycine max HOM05D002988 ORTHO05D003479 5.9e-21 103.6 64 79.7
Glyma.09G209100 Glycine max HOM05D002988 ORTHO05D003479 5.9e-21 103.6 64 79.7
TPR.G19450 Trifolium pratense HOM05D002988 ORTHO05D003479 5.9e-21 103.6 64 81.2
THA.LOC104812762 Tarenaya hassleriana HOM05D002988 ORTHO05D003479 7.7e-21 103.2 64 79.7
ATR0559G075 Amborella trichopoda HOM05D002988 ORTHO05D003479 1.0e-20 102.8 66 78.8
Ca_25164_v3 Cicer arietinum L. HOM05D002988 ORTHO05D003479 1.0e-20 102.8 64 79.7
unitig_747.g21364 Utricularia gibba HOM05D002988 ORTHO05D003479 1.0e-20 102.8 66 80.3
Zm00001eb335850 Zea mays HOM05D002988 ORTHO05D003479 1.0e-20 102.8 64 78.1
VMungo1215G2616 Vigna mungo HOM05D002988 ORTHO05D003479 1.3e-20 102.4 64 78.1
Eucgr.E00221 Eucalyptus grandis HOM05D002988 ORTHO05D003479 1.7e-20 102.1 63 82.5
Eucgr.L02550 Eucalyptus grandis HOM05D002988 ORTHO05D003479 1.7e-20 102.1 66 81.8
FAN18G1509 Fragaria x ananassa HOM05D002988 ORTHO05D003479 1.7e-20 102.1 63 81.0
Lalb_Chr09g0325421 Lupinus albus HOM05D002988 ORTHO05D003479 1.7e-20 102.1 64 79.7
arahy.Tifrunner.gnm1.ann1.79TK8E Arachis hypogaea HOM05D002988 ORTHO05D003479 2.3e-20 101.7 64 79.7
arahy.Tifrunner.gnm1.ann1.VSYF54 Arachis hypogaea HOM05D002988 ORTHO05D003479 2.3e-20 101.7 64 79.7
Medtr5g028030 Medicago truncatula HOM05D002988 ORTHO05D003479 2.3e-20 101.7 64 78.1
arahy.Tifrunner.gnm1.ann1.4RS22V Arachis hypogaea HOM05D002988 ORTHO05D003479 2.9e-20 101.3 64 78.1
Lj2g0001165 Lotus japonicus HOM05D002988 ORTHO05D003479 2.9e-20 101.3 64 79.7
Lj2g0027923 Lotus japonicus HOM05D002988 ORTHO05D003479 2.9e-20 101.3 64 79.7
Psat2g139520 Pisum sativum HOM05D002988 ORTHO05D003479 2.9e-20 101.3 64 79.7
Aa31LG2G13860 Aethionema arabicum HOM05D002988 ORTHO05D003479 5.0e-20 100.5 64 78.1
CAN.G137.27 Capsicum annuum HOM05D000185 ORTHO05D000105 8.6e-20 99.8 65 80.0
ClCG09G011590 Citrullus lanatus HOM05D002988 ORTHO05D003479 8.6e-20 99.8 58 86.2
Gohir.A03G000029 Gossypium hirsutum HOM05D002988 ORTHO05D003479 2.5e-19 98.2 57 87.7
CSS0020264 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 4.2e-19 97.4 66 80.3
Nn2g13373 Nelumbo nucifera HOM05D002988 ORTHO05D003479 4.2e-19 97.4 66 78.8
BcaB07g32875 Brassica carinata HOM05D002988 ORTHO05D003479 5.5e-19 97.1 57 87.7
BcaB07g32878 Brassica carinata HOM05D002988 ORTHO05D003479 5.5e-19 97.1 57 87.7
Atru.chr6.1538 Acer truncatum HOM05D002988 ORTHO05D003479 7.2e-19 96.7 56 89.3
Aa31LG9G15550 Aethionema arabicum HOM05D002988 ORTHO05D003479 9.5e-19 96.3 64 76.6
Ah.01g012950 Amaranthus hybridus HOM05D002988 ORTHO05D003479 1.2e-18 95.9 64 76.6
AUR62015204 Chenopodium quinoa HOM05D002988 ORTHO05D003479 1.6e-18 95.5 64 76.6
DCAR_008208 Daucus carota HOM05D002988 ORTHO05D003479 6.1e-18 93.6 66 75.8
PGR042G1591 Punica granatum HOM05D002988 ORTHO05D003479 8.0e-18 93.2 64 76.6
CDE08G0151 Ceratophyllum demersum HOM05D002988 ORTHO05D003479 1.8e-17 92.0 57 80.7
Ciclev10000803m.g Citrus clementina HOM05D002988 ORTHO05D003479 2.3e-17 91.7 55 85.5
Cpa.g.sc16.1 Carica papaya HOM05D002988 ORTHO05D003479 6.8e-17 90.1 54 85.2
HanXRQChr17g0537631 Helianthus annuus HOM05D002988 ORTHO05D003479 4.4e-16 87.4 67 73.1
HanXRQChr17g0537641 Helianthus annuus HOM05D002988 ORTHO05D003479 4.4e-16 87.4 67 73.1
Mapoly0024s0008 Marchantia polymorpha HOM05D002988 ORTHO05D003479 8.3e-15 83.2 64 67.2
SEGI_01029 Sequoiadendron giganteum HOM05D002988 ORTHO05D003479 7.0e-14 80.1 64 62.5
Migut.A00607 Erythranthe guttata HOM05D002988 ORTHO05D003479 9.2e-14 79.7 63 63.5
TAR636G2155 Trochodendron aralioides HOM05D002988 ORTHO05D003479 1.2e-13 79.3 56 73.2
AUR62017667 Chenopodium quinoa HOM05D002988 ORTHO05D003479 4.5e-13 77.4 60 65.0
Lj8C321T9 Lonicera japonica HOM05D002988 ORTHO05D003479 5.9e-13 77.0 46 82.6
SalBow8G3593 Salvia bowleyana HOM05D002988 ORTHO05D003479 5.9e-13 77.0 61 65.6
Actinidia01328 Actinidia chinensis HOM05D002988 ORTHO05D003479 1.7e-12 75.5 65 66.2
CDE02G4409 Ceratophyllum demersum HOM05D002988 ORTHO05D003479 5.0e-12 73.9 47 76.6
Pp3c7_24670 Physcomitrium patens HOM05D002988 ORTHO05D003479 8.6e-12 73.2 66 60.6
Pp3c7_24683 Physcomitrium patens HOM05D002988 ORTHO05D003479 8.6e-12 73.2 66 60.6
SEGI_12451 Sequoiadendron giganteum HOM05D002988 ORTHO05D003479 3.3e-11 71.2 56 60.7
SMO304G0131 Selaginella moellendorffii HOM05D002988 ORTHO05D003479 7.3e-11 70.1 64 57.8
CSS0034248 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 1.2e-10 69.3 66 63.6
QL12p001089 Quercus lobata HOM05D002988 ORTHO05D003479 7.5e-08 60.1 34 88.2
SGA_v2.0_scaffold89G27433 Striga asiatica HOM05D002988 ORTHO05D003479 2.4e-06 55.1 40 72.5
EL10Ac9g22922 Beta vulgaris HOM05D002988 ORTHO05D003479 4.1e-06 54.3 60 50.0


User provided reference genes

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