Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.4e-192 676.0 327 100.0
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 1.4e-192 676.0 327 100.0
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 3.6e-135 485.3 325 72.6
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 2.4e-131 472.6 324 72.8
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 9.5e-128 460.7 327 68.8
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 4.7e-119 431.8 327 64.8
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.0e-118 428.7 327 68.2
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 5.8e-117 424.9 325 66.5
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 2.9e-116 422.5 326 65.0
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 4.9e-116 421.8 326 65.0
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.4e-115 420.2 325 65.5
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.4e-115 420.2 325 65.2
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 7.0e-115 417.9 325 64.6
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 9.2e-115 417.5 328 65.5
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 1.6e-114 416.8 326 65.6
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 7.8e-114 414.5 326 63.8
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.3e-113 413.7 333 63.4
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.7e-113 413.3 323 64.1
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 3.0e-113 412.5 324 64.8
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.0e-113 412.5 327 63.3
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 3.9e-113 412.1 325 63.4
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 6.6e-113 411.4 323 65.0
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 8.6e-113 411.0 325 63.7
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 8.6e-113 411.0 364 59.1
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.5e-112 410.2 328 63.7
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 1.5e-112 410.2 326 64.7
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.5e-112 409.5 328 63.7
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 2.5e-112 409.5 328 63.7
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 2.5e-112 409.5 326 62.6
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.3e-112 409.1 324 65.1
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.1e-111 406.4 326 64.4
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 2.1e-111 406.4 325 63.7
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 6.2e-111 404.8 326 64.1
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.2e-111 404.8 324 63.9
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.2e-111 404.8 324 63.9
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.4e-110 403.7 326 63.5
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 1.4e-110 403.7 326 62.9
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.8e-110 403.3 321 62.9
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 2.3e-110 402.9 326 61.7
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.1e-110 402.5 326 63.8
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 5.2e-110 401.7 326 63.8
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 6.8e-110 401.4 324 63.6
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 6.8e-110 401.4 325 62.5
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 8.9e-110 401.0 325 63.7
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.6e-109 399.4 328 61.0
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 7.5e-109 397.9 326 61.7
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.3e-108 397.1 361 59.3
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.7e-108 396.7 327 61.5
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.2e-108 396.4 323 63.2
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 2.9e-108 396.0 325 61.5
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 3.7e-108 395.6 326 61.7
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 4.9e-108 395.2 324 61.1
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 6.4e-108 394.8 326 62.0
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 8.3e-108 394.4 326 61.3
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 8.3e-108 394.4 326 61.3
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.4e-107 393.7 322 63.7
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 1.9e-107 393.3 325 61.2
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.9e-107 393.3 326 62.6
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 2.4e-107 392.9 336 61.0
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 4.1e-107 392.1 326 62.9
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 5.4e-107 391.7 326 60.7
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 5.4e-107 391.7 326 63.2
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 7.1e-107 391.3 326 60.4
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 7.1e-107 391.3 325 62.8
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 3.5e-106 389.0 325 61.2
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 7.8e-106 387.9 326 62.0
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.0e-105 387.5 326 60.4
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 2.3e-105 386.3 326 60.4
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.3e-105 386.3 325 62.5
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.0e-105 386.0 325 61.5
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 2.5e-104 382.9 326 61.0
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 2.5e-104 382.9 324 61.4
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 7.3e-104 381.3 327 59.9
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 7.3e-104 381.3 327 61.2
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 7.3e-104 381.3 327 60.6
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 9.5e-104 380.9 324 60.2
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.1e-103 379.8 324 61.1
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 2.1e-103 379.8 326 58.3
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 3.6e-103 379.0 326 60.7
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.7e-103 378.6 325 60.3
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 1.1e-102 377.5 326 60.4
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.1e-102 377.5 294 66.0
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 1.1e-102 377.5 279 68.5
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 2.3e-102 376.3 324 60.2
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 2.3e-102 376.3 323 60.1
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 8.9e-102 374.4 324 60.5
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 1.2e-101 374.0 324 58.3
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.5e-101 373.6 293 64.5
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 4.4e-101 372.1 325 59.7
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 7.5e-101 371.3 324 58.6
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 7.5e-101 371.3 334 58.7
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 1.4e-99 367.1 343 57.7
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 3.2e-99 365.9 324 58.0
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 3.2e-99 365.9 324 58.3
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 5.4e-99 365.2 293 63.5
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 7.8e-98 361.3 294 64.6
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 2.3e-97 359.8 323 57.9
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 1.1e-96 357.5 328 57.3
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.5e-96 357.1 294 62.6
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 2.5e-96 356.3 323 59.1
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 5.6e-96 355.1 330 56.1
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 2.8e-95 352.8 325 57.2
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 3.6e-95 352.4 326 58.9
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 3.1e-94 349.4 323 57.9
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.0e-94 349.0 325 56.9
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 2.0e-93 346.7 294 60.5
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 8.4e-92 341.3 324 55.9
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.7e-89 333.6 267 62.5
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 8.1e-87 324.7 318 54.1
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.9e-83 313.5 281 56.9
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.1e-80 304.3 336 48.5
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 2.5e-80 303.1 295 54.9
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.1e-79 300.1 325 49.8
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 6.2e-79 298.5 248 62.9
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 5.3e-78 295.4 323 51.4
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 8.4e-76 288.1 323 48.3
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 2.3e-73 280.0 277 53.1
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.5e-72 277.3 324 48.8
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 6.2e-71 271.9 331 45.6
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 2.9e-68 263.1 169 72.8
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 2.5e-67 260.0 254 57.5
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 8.7e-57 224.9 224 54.5
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 5.1e-49 199.1 290 39.0
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 2.4e-46 190.3 337 38.9
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.8e-41 174.1 309 33.3
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.1e-38 164.9 147 60.5
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.8e-38 164.1 170 51.8
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 1.6e-34 151.0 190 46.8
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 8.8e-33 145.2 192 45.3
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 5.7e-32 142.5 190 45.3
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.7e-28 131.0 177 45.2
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.9e-27 127.5 94 63.8
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 4.2e-27 126.3 169 45.6
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 2.3e-25 120.6 365 27.1
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 3.0e-25 120.2 91 64.8
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 4.0e-25 119.8 302 27.8
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 8.8e-25 118.6 82 68.3
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 4.1e-22 109.8 89 64.0
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 9.1e-22 108.6 106 54.7
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.7e-20 104.4 112 48.2
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.2e-16 91.7 89 55.1
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 3.4e-16 90.1 61 62.3
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 7.5e-16 89.0 68 61.8
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 4.5e-13 79.7 110 43.6
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 7.7e-13 79.0 60 66.7
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.0e-12 78.6 61 57.4
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.7e-12 77.8 45 71.1
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.9e-12 77.0 45 73.3
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.9e-12 77.0 45 73.3
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 6.6e-12 75.9 139 35.3
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 1.5e-11 74.7 87 46.0
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 7.2e-11 72.4 88 47.7
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 1.2e-10 71.6 83 48.2
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 1.2e-10 71.6 83 48.2
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.8e-10 70.5 37 86.5
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 4.7e-10 69.7 216 27.3
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.3e-09 67.4 56 60.7
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 7.5e-08 62.4 112 41.1
Cc02_g34080 Coffea canephora HOM05D004481 ORTHO05D005350 7.0e-06 55.8 40 65.0
RcHm_v2.0_Chr6g0257511 Rosa chinensis HOM05D004481 ORTHO05D005350 7.0e-06 55.8 52 53.8


User provided reference genes

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