Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.5e-48 195.3 112 100.0
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.7e-20 102.8 96 58.3
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.8e-20 101.7 96 56.2
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.5e-20 100.9 94 56.4
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.5e-19 99.0 100 53.0
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.6e-18 96.3 97 55.7
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 4.7e-18 94.7 95 51.6
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.3e-17 92.4 95 55.8
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.3e-17 92.4 95 55.8
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 4.0e-17 91.7 97 53.6
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 5.2e-17 91.3 88 58.0
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.5e-16 89.7 97 54.6
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.5e-16 89.7 95 53.7
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 4.4e-16 88.2 89 58.4
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 4.4e-16 88.2 95 52.6
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 5.7e-16 87.8 103 51.5
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 1.3e-15 86.7 92 54.3
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.2e-15 85.9 98 53.1
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 2.2e-15 85.9 91 52.7
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.2e-15 85.9 95 53.7
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.8e-15 85.5 97 50.5
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.8e-15 84.7 99 45.5
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 4.8e-15 84.7 91 52.7
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 4.8e-15 84.7 97 53.6
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.8e-15 84.7 96 50.0
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 6.3e-15 84.3 96 47.9
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.4e-14 83.2 90 51.1
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 2.4e-14 82.4 93 52.7
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.4e-14 82.4 92 50.0
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.1e-14 82.0 93 52.7
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.1e-14 82.0 98 49.0
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.1e-14 82.0 97 47.4
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 3.1e-14 82.0 98 51.0
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.1e-14 82.0 97 47.4
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 4.1e-14 81.6 99 49.5
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 4.1e-14 81.6 95 50.5
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 5.3e-14 81.3 80 51.2
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.3e-14 81.3 90 52.2
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 7.0e-14 80.9 89 52.8
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.2e-13 80.1 97 51.5
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-13 80.1 90 48.9
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.6e-13 79.7 88 50.0
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.6e-13 79.7 94 52.1
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.0e-13 79.3 93 51.6
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.0e-13 79.3 96 42.7
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 2.0e-13 79.3 96 46.9
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 4.5e-13 78.2 96 42.7
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 5.9e-13 77.8 78 50.0
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 5.9e-13 77.8 93 48.4
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.9e-13 77.8 94 46.8
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 5.9e-13 77.8 92 53.3
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 7.7e-13 77.4 87 46.0
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 7.7e-13 77.4 87 46.0
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 7.7e-13 77.4 87 49.4
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.7e-13 77.4 96 41.7
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 7.7e-13 77.4 95 49.5
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 7.7e-13 77.4 91 53.8
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.0e-12 77.0 91 49.5
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.3e-12 76.6 96 44.8
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.7e-12 76.3 86 47.7
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-12 76.3 94 45.7
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-12 76.3 94 44.7
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.7e-12 76.3 90 50.0
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.7e-12 76.3 99 53.5
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.2e-12 75.9 57 61.4
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 2.2e-12 75.9 98 50.0
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.2e-12 75.9 93 44.1
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.9e-12 75.5 95 48.4
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 2.9e-12 75.5 80 50.0
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.8e-12 75.1 90 50.0
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 3.8e-12 75.1 96 43.8
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 3.8e-12 75.1 97 45.4
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.0e-12 74.7 96 40.6
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 5.0e-12 74.7 96 46.9
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.0e-12 74.7 92 45.7
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 5.0e-12 74.7 98 49.0
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.5e-12 74.3 94 44.7
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 8.5e-12 73.9 75 52.0
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 8.5e-12 73.9 96 45.8
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 8.5e-12 73.9 91 44.0
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 8.5e-12 73.9 95 44.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 8.5e-12 73.9 86 43.0
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 1.1e-11 73.6 93 44.1
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.1e-11 73.6 89 49.4
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 1.5e-11 73.2 83 53.0
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.5e-11 73.2 92 48.9
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.9e-11 72.8 90 47.8
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.5e-11 72.4 93 49.5
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 2.5e-11 72.4 88 45.5
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 3.2e-11 72.0 88 46.6
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 3.2e-11 72.0 98 44.9
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 4.2e-11 71.6 99 43.4
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.2e-11 71.6 55 61.8
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 5.5e-11 71.2 95 48.4
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 5.5e-11 71.2 104 45.2
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 5.5e-11 71.2 87 50.6
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 5.5e-11 71.2 88 45.5
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.2e-11 70.9 87 48.3
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.2e-11 70.9 87 48.3
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 7.2e-11 70.9 96 42.7
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 7.2e-11 70.9 104 44.2
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 9.4e-11 70.5 87 48.3
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.4e-11 70.5 87 48.3
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 9.4e-11 70.5 93 44.1
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.2e-10 70.1 90 44.4
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.6e-10 69.7 86 45.3
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.6e-10 69.7 99 42.4
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.6e-10 69.7 59 52.5
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.7e-10 68.9 48 62.5
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 3.6e-10 68.6 95 42.1
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.6e-10 68.6 98 43.9
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 4.7e-10 68.2 86 41.9
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 4.7e-10 68.2 86 41.9
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.7e-10 68.2 95 43.2
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 4.7e-10 68.2 88 44.3
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 4.7e-10 68.2 85 45.9
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 6.1e-10 67.8 95 43.2
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 6.1e-10 67.8 104 42.3
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 8.0e-10 67.4 90 44.4
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 8.0e-10 67.4 80 48.8
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.0e-09 67.0 82 48.8
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.0e-09 67.0 83 39.8
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.0e-09 67.0 37 75.7
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.0e-09 67.0 97 41.2
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.8e-09 66.2 83 44.6
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 2.3e-09 65.9 95 43.2
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.3e-09 65.9 81 45.7
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 2.3e-09 65.9 103 39.8
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 2.3e-09 65.9 84 44.0
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.0e-09 65.5 95 43.2
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 3.0e-09 65.5 111 37.8
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 3.0e-09 65.5 99 43.4
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 4.0e-09 65.1 86 41.9
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 4.0e-09 65.1 98 45.9
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.2e-09 64.7 36 77.8
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 5.2e-09 64.7 104 48.1
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 5.2e-09 64.7 82 41.5
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.8e-09 64.3 54 59.3
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 8.8e-09 63.9 94 46.8
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 8.8e-09 63.9 97 41.2
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-08 63.5 66 47.0
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.2e-08 63.5 98 43.9
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.5e-08 63.2 48 60.4
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.5e-08 63.2 97 41.2
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.5e-08 63.2 92 43.5
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.6e-08 62.4 41 68.3
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 2.6e-08 62.4 83 49.4
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.6e-08 62.4 87 41.4
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 4.4e-08 61.6 94 38.3
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 5.7e-08 61.2 96 39.6
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.7e-08 61.2 82 43.9
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 5.7e-08 61.2 83 42.2
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 5.7e-08 61.2 74 47.3
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 9.8e-08 60.5 53 52.8
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 9.8e-08 60.5 83 44.6
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.3e-07 60.1 90 41.1
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.3e-07 60.1 56 51.8
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.7e-07 59.7 87 46.0
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 1.7e-07 59.7 94 42.6
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.7e-07 59.7 92 42.4
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 2.2e-07 59.3 99 41.4
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 2.8e-07 58.9 88 38.6
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.8e-07 58.9 93 46.2
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 3.7e-07 58.5 90 44.4
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.7e-07 58.5 88 38.6
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 4.8e-07 58.2 93 38.7
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.8e-07 58.2 57 50.9
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 6.3e-07 57.8 72 40.3
EL10Ac7g16989 Beta vulgaris HOM05D040036 ORTHO05D004215 8.3e-07 57.4 90 44.4
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.1e-06 57.0 100 36.0
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.1e-06 57.0 100 36.0
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 1.1e-06 57.0 99 35.4
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 1.1e-06 57.0 97 38.1
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.4e-06 56.6 100 35.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.4e-06 56.6 100 35.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.8e-06 56.2 96 35.4
Ah.08g210930 Amaranthus hybridus HOM05D040036 ORTHO05D004215 2.4e-06 55.8 97 41.2
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 3.1e-06 55.5 74 39.2
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 4.1e-06 55.1 88 40.9
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 5.4e-06 54.7 45 53.3
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 7.0e-06 54.3 92 39.1
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 7.0e-06 54.3 92 39.1
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 7.0e-06 54.3 80 40.0


User provided reference genes

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