Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.1e-151 537.7 275 100.0
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.2e-137 491.5 276 92.0
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 2.4e-68 263.1 320 52.2
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 3.2e-68 262.7 299 53.2
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 4.3e-65 252.3 319 50.5
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.4e-63 246.5 311 50.5
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 4.0e-63 245.7 308 49.7
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 3.2e-60 236.1 308 48.1
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 4.6e-59 232.3 337 45.7
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.7e-58 230.3 321 47.4
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 2.8e-56 223.0 319 47.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.8e-55 220.3 325 46.2
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.1e-52 208.4 291 44.0
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.1e-51 206.8 291 43.6
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.7e-51 206.5 292 46.2
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 4.6e-51 205.7 339 45.4
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.1e-50 202.2 332 42.8
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.5e-49 200.7 384 39.6
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.6e-49 198.7 313 42.8
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 7.4e-49 198.4 316 42.7
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 7.4e-49 198.4 382 38.2
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.6e-48 197.2 313 42.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 2.1e-48 196.8 329 40.7
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 2.8e-48 196.4 288 45.5
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 3.7e-48 196.1 319 44.2
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 4.8e-48 195.7 319 44.2
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 4.8e-48 195.7 313 42.5
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 4.8e-48 195.7 321 40.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.1e-47 194.5 369 39.0
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.4e-47 193.4 313 42.5
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 2.4e-47 193.4 344 40.4
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 3.1e-47 193.0 357 39.5
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 5.3e-47 192.2 370 38.9
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 6.9e-47 191.8 332 41.6
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 9.0e-47 191.4 346 39.0
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.2e-46 191.0 368 39.4
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 1.2e-46 191.0 368 39.4
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.0e-46 190.3 367 39.0
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 3.4e-46 189.5 347 39.8
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 3.4e-46 189.5 336 41.4
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 4.5e-46 189.1 350 39.1
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.3e-45 187.6 339 38.9
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.3e-45 187.6 368 38.6
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.2e-45 186.8 366 38.8
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.8e-45 186.0 352 37.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.1e-44 184.5 343 39.9
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.4e-44 184.1 339 40.7
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 1.9e-44 183.7 298 43.0
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.9e-44 183.7 338 39.6
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.5e-44 183.3 341 39.0
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.5e-44 183.3 439 36.0
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.2e-44 183.0 370 36.5
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.2e-44 183.0 351 38.7
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 5.5e-44 182.2 349 41.0
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 7.1e-44 181.8 294 42.5
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 9.3e-44 181.4 301 40.9
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.2e-43 181.0 341 37.2
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.1e-43 180.3 315 41.0
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 3.5e-43 179.5 337 37.1
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 4.6e-43 179.1 372 37.4
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 6.0e-43 178.7 363 38.6
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.0e-42 177.9 334 38.6
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.3e-42 177.6 278 44.2
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.5e-41 174.1 365 37.3
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.9e-41 173.7 375 37.3
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 9.6e-41 171.4 351 38.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.1e-40 170.2 362 37.3
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 2.8e-40 169.9 299 42.1
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 3.7e-40 169.5 292 41.8
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 6.3e-40 168.7 370 35.9
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.4e-39 167.5 339 37.8
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.8e-39 167.2 292 41.4
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.8e-39 167.2 295 41.4
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.1e-39 166.4 289 42.2
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 4.1e-39 166.0 362 35.1
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 6.9e-39 165.2 317 39.1
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.5e-38 164.1 291 40.2
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.7e-37 160.6 300 38.7
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.7e-37 160.6 330 37.9
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 2.9e-37 159.8 296 38.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 8.4e-37 158.3 332 35.2
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.1e-36 157.9 261 42.9
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 1.1e-36 157.9 261 42.9
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 4.2e-36 156.0 337 36.5
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.2e-36 156.0 142 61.3
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 9.3e-36 154.8 282 39.4
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-35 154.5 317 38.2
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.1e-35 153.7 347 34.6
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.0e-34 151.4 373 34.0
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.3e-34 151.0 286 40.9
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.3e-34 151.0 333 37.2
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.8e-34 150.6 175 48.0
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.3e-34 150.2 260 41.2
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 3.0e-34 149.8 260 41.2
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.9e-34 149.4 287 39.7
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 3.9e-34 149.4 314 38.2
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 6.7e-34 148.7 372 34.7
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.1e-33 147.9 324 35.8
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.1e-33 147.9 398 31.4
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.5e-33 147.5 288 42.4
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.5e-33 147.5 111 66.7
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.5e-33 147.5 294 39.5
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.5e-33 147.5 135 57.8
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 9.7e-33 144.8 139 56.8
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.2e-32 143.7 172 52.9
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 4.8e-32 142.5 319 36.7
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 6.3e-32 142.1 323 35.9
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.3e-32 142.1 293 38.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.4e-31 141.0 296 38.5
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 2.4e-31 140.2 296 38.5
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 2.4e-31 140.2 296 38.5
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.6e-30 136.7 295 36.3
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 5.9e-30 135.6 161 48.4
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 5.0e-29 132.5 288 36.8
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.5e-29 132.1 297 36.7
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 7.2e-28 128.6 134 56.7
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.6e-27 127.5 104 67.3
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.1e-27 127.1 306 34.6
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.1e-27 127.1 149 49.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 2.7e-27 126.7 301 33.6
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 6.1e-27 125.6 158 48.7
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 6.1e-27 125.6 158 48.7
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.0e-26 124.8 316 35.1
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 2.3e-26 123.6 147 49.7
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 3.9e-26 122.9 111 62.2
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 8.8e-26 121.7 133 49.6
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-25 120.9 158 46.8
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.5e-25 120.9 158 46.8
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.3e-25 119.4 116 54.3
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 7.4e-25 118.6 148 47.3
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 9.7e-25 118.2 202 37.1
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.3e-24 117.9 224 38.8
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 1.3e-24 117.9 144 45.8
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 1.3e-24 117.9 284 34.9
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.7e-24 117.5 332 31.3
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.7e-24 117.5 168 42.9
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.2e-24 117.1 299 34.4
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.2e-24 117.1 299 34.4
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.2e-24 117.1 299 34.4
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.7e-24 116.3 293 34.1
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 6.3e-24 115.5 289 33.9
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 8.2e-24 115.2 275 34.9
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 8.2e-24 115.2 273 34.8
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.8e-23 114.0 164 42.7
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 9.1e-23 111.7 284 33.5
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 4.5e-22 109.4 123 48.0
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 7.7e-22 108.6 282 32.3
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.0e-21 108.2 283 35.0
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.3e-21 107.8 283 33.6
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.1e-20 104.8 77 72.7
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.9e-20 104.0 77 72.7
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 1.2e-19 101.3 340 31.8
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 3.6e-19 99.8 138 49.3
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.1e-19 99.0 151 39.1
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.0e-18 98.2 156 39.1
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 6.7e-18 95.5 113 49.6
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 8.8e-18 95.1 190 38.9
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 3.3e-17 93.2 191 38.7
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 4.4e-17 92.8 292 27.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.3e-16 91.3 283 29.7
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.2e-16 90.5 296 30.4
unitig_37.g13077 Utricularia gibba HOM05D003874 ORTHO05D030560 2.2e-16 90.5 91 53.8
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.8e-15 87.4 100 43.0
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 4.1e-15 86.3 285 28.4
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 6.5e-13 79.0 297 26.3
SalBow2G2594 Salvia bowleyana HOM05D033584 ORTHO05D030560 3.6e-11 73.2 101 44.6
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 3.0e-10 70.1 168 31.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.0e-09 67.4 160 31.9
SalBow8G3890 Salvia bowleyana HOM05D033584 ORTHO05D030560 4.4e-09 66.2 96 42.7
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 9.7e-09 65.1 234 29.9
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.3e-08 64.7 43 76.7


User provided reference genes

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