Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G4183 Salvia bowleyana HOM05D000029 ORTHO05D003879 9.0e-102 374.8 431 100.0
SalBow6G2947 Salvia bowleyana HOM05D000029 ORTHO05D003879 4.5e-93 345.9 417 95.4
SalBow6G0200 Salvia bowleyana HOM05D000029 ORTHO05D003879 1.5e-59 234.6 158 77.2
SalBow6G0778 Salvia bowleyana HOM05D000029 ORTHO05D003879 1.5e-59 234.6 158 77.2
SalBow6G0392 Salvia bowleyana HOM05D000029 ORTHO05D003879 6.1e-58 229.2 374 86.4
SalBow6G7126 Salvia bowleyana HOM05D000029 ORTHO05D003879 4.0e-57 226.5 374 85.8
MSTRG.22443 Avicennia marina HOM05D000029 ORTHO05D003879 2.8e-42 177.2 158 59.5
Nitab4.5_0010911g0020 Nicotiana tabacum HOM05D000029 ORTHO05D003879 3.0e-41 173.7 153 54.9
Migut.N03343 Erythranthe guttata HOM05D000029 ORTHO05D003879 6.8e-41 172.6 161 55.9
Sopen11g009160 Solanum pennellii HOM05D000029 ORTHO05D003879 1.2e-40 171.8 153 56.9
Nitab4.5_0000560g0040 Nicotiana tabacum HOM05D000029 ORTHO05D003879 9.8e-40 168.7 156 53.8
CAN.G342.4 Capsicum annuum HOM05D000029 ORTHO05D003879 1.1e-38 165.2 151 56.3
MSTRG.1520 Avicennia marina HOM05D000029 ORTHO05D003879 3.2e-38 163.7 154 54.5
Nitab4.5_0000560g0090 Nicotiana tabacum HOM05D000029 ORTHO05D003879 1.0e-36 158.7 158 54.4
Peaxi162Scf00310g00823 Petunia axillaris HOM05D000029 ORTHO05D003879 8.6e-36 155.6 155 53.5
Cc00_g03680 Coffea canephora HOM05D000029 ORTHO05D003879 1.5e-35 154.8 154 55.2
PGSC0003DMG400009238 Solanum tuberosum HOM05D000029 ORTHO05D003879 2.5e-35 154.1 138 56.5
Solyc11g017270.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 2.8e-34 150.6 153 51.6
Dinv08018 Davidia involucrata HOM05D000029 ORTHO05D003879 3.6e-34 150.2 156 51.3
Solyc11g017280.2 Solanum lycopersicum HOM05D000029 ORTHO05D003879 4.7e-34 149.8 138 56.5
Cc00_g11880 Coffea canephora HOM05D000029 ORTHO05D003879 3.1e-33 147.1 147 57.1
vmacro12494 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 3.1e-33 147.1 147 51.0
vmacro08239 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 4.0e-33 146.7 151 51.0
Lj4C507T2 Lonicera japonica HOM05D000029 ORTHO05D003879 5.2e-33 146.4 156 51.9
Actinidia23329 Actinidia chinensis HOM05D000029 ORTHO05D003879 6.8e-33 146.0 159 52.2
Lj4A516T35 Lonicera japonica HOM05D000029 ORTHO05D003879 8.9e-33 145.6 156 51.9
vmacro05722 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 1.5e-32 144.8 152 51.3
vmacro05721 Vaccinium macrocarpon HOM05D000029 ORTHO05D003879 3.4e-32 143.7 152 48.7
Atru.chr13.1823 Acer truncatum HOM05D000029 ORTHO05D003879 4.4e-32 143.3 155 52.3
CSS0047735 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 5.8e-32 142.9 156 50.0
SGA_v2.0_scaffold149G36603 Striga asiatica HOM05D000029 ORTHO05D003879 5.8e-32 142.9 141 52.5
CSS0006375 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 7.5e-32 142.5 156 50.0
CSS0001053 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 9.8e-32 142.1 156 50.0
CSS0010817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 9.8e-32 142.1 156 50.0
CSS0010851 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 9.8e-32 142.1 156 50.0
ClCG09G010450 Citrullus lanatus HOM05D000029 ORTHO05D003879 2.9e-31 140.6 155 49.0
vmacro22381 Vaccinium macrocarpon HOM05D000132 ORTHO05D000058 2.9e-31 140.6 153 47.7
Rhsim10G0041300 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.4e-30 138.3 149 50.3
CSS0046817 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D003879 2.4e-30 137.5 155 49.0
CANSAT64G2826 Cannabis sativa HOM05D000029 ORTHO05D003879 9.2e-30 135.6 149 48.3
RhsimUnG0063000 Rhododendron simsii HOM05D000029 ORTHO05D003879 9.2e-30 135.6 155 46.5
Sc01g0001730 Simmondsia chinensis HOM05D000029 ORTHO05D003879 9.2e-30 135.6 155 50.3
Rhsim10G0041900 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.6e-29 134.8 148 50.0
TPR.G8832 Trifolium pratense HOM05D000029 ORTHO05D003879 1.6e-29 134.8 160 48.8
Nitab4.5_0010911g0010 Nicotiana tabacum HOM05D000029 ORTHO05D003879 3.5e-29 133.7 139 53.2
Rhsim10G0034100 Rhododendron simsii HOM05D000029 ORTHO05D003879 4.6e-29 133.3 148 46.6
Phvul.004G084688 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 6.0e-29 132.9 151 49.7
RhsimUnG0063100 Rhododendron simsii HOM05D000029 ORTHO05D003879 1.0e-28 132.1 136 52.2
MD10G1047300 Malus domestica HOM05D000029 ORTHO05D003879 2.3e-28 131.0 159 47.2
PGR102G0708 Punica granatum HOM05D000029 ORTHO05D003879 3.0e-28 130.6 157 47.1
QL02p034028 Quercus lobata HOM05D000029 ORTHO05D003879 3.0e-28 130.6 119 59.7
RcHm_v2.0_Chr1g0316221 Rosa chinensis HOM05D015504 ORTHO05D003879 3.9e-28 130.2 154 46.8
MD10G1047000 Malus domestica HOM05D000029 ORTHO05D003879 5.0e-28 129.8 134 50.7
Phvul.004G085076 Phaseolus vulgaris HOM05D000029 ORTHO05D003879 5.0e-28 129.8 151 49.0
Atru.chr13.1802 Acer truncatum HOM05D000029 ORTHO05D003879 6.6e-28 129.4 151 47.0
FAN27G1538 Fragaria x ananassa HOM05D000029 ORTHO05D003879 1.1e-27 128.6 156 45.5
Glyma.16G156100 Glycine max HOM05D000029 ORTHO05D003879 1.5e-27 128.3 112 58.0
Atru.chr13.1828 Acer truncatum HOM05D000029 ORTHO05D003879 1.9e-27 127.9 131 54.2
MELO3C023665.2 Cucumis melo HOM05D000029 ORTHO05D003879 1.9e-27 127.9 155 46.5
Glyma.16G156200 Glycine max HOM05D000029 ORTHO05D003879 2.5e-27 127.5 112 57.1
Sed0023164 Sechium edule HOM05D000029 ORTHO05D003879 3.3e-27 127.1 152 47.4
Lsat_1_v5_gn_1_10521 Lactuca sativa HOM05D000029 ORTHO05D003879 4.3e-27 126.7 155 45.8
Prupe.8G051700 Prunus persica HOM05D000029 ORTHO05D003879 5.6e-27 126.3 150 46.7
FvH4_2g12120 Fragaria vesca HOM05D000029 ORTHO05D003879 1.2e-26 125.2 156 44.9
FAN24G0359 Fragaria x ananassa HOM05D000029 ORTHO05D003879 1.2e-26 125.2 156 44.9
FvH4_5g16590 Fragaria vesca HOM05D000029 ORTHO05D003879 1.6e-26 124.8 154 46.1
arahy.Tifrunner.gnm1.ann1.TX2FLU Arachis hypogaea HOM05D000029 ORTHO05D003879 2.8e-26 124.0 158 44.9
arahy.Tifrunner.gnm1.ann1.BISG48 Arachis hypogaea HOM05D000029 ORTHO05D003879 6.2e-26 122.9 158 45.6
TWI34G0629 Tripterygium wilfordii HOM05D000029 ORTHO05D003879 6.2e-26 122.9 153 47.7
CiPaw.15G082500 Carya illinoinensis HOM05D000029 ORTHO05D003879 8.1e-26 122.5 149 47.0
Ca_10609_v3 Cicer arietinum L. HOM05D000029 ORTHO05D003879 1.1e-25 122.1 125 52.8
Manes.02G190900 Manihot esculenta HOM05D000029 ORTHO05D003879 1.1e-25 122.1 143 49.0
FAN08G2074 Fragaria x ananassa HOM05D000029 ORTHO05D003879 1.4e-25 121.7 126 50.8
Manes.18G100200 Manihot esculenta HOM05D000029 ORTHO05D003879 1.4e-25 121.7 145 46.2
Lalb_Chr19g0129791 Lupinus albus HOM05D000029 ORTHO05D003879 1.8e-25 121.3 154 44.8
Atru.chr13.1801 Acer truncatum HOM05D000029 ORTHO05D003879 3.1e-25 120.6 131 51.9
Atru.chr13.1800 Acer truncatum HOM05D000029 ORTHO05D003879 4.0e-25 120.2 131 51.9
Lj5g0012115 Lotus japonicus HOM05D000029 ORTHO05D003879 4.0e-25 120.2 148 48.0
Oeu030006.1 Olea europaea HOM05D016129 ORTHO05D003798 4.0e-25 120.2 152 44.7
Prupe.8G056100 Prunus persica HOM05D000029 ORTHO05D003879 4.0e-25 120.2 152 46.1
Sabra19G0096000 Salix brachista HOM05D000029 ORTHO05D003879 4.0e-25 120.2 122 47.5
Potri.019G084800 Populus trichocarpa HOM05D000029 ORTHO05D003879 5.2e-25 119.8 153 45.1
Sabra19G0095900 Salix brachista HOM05D000029 ORTHO05D003879 5.2e-25 119.8 125 51.2
RcHm_v2.0_Chr6g0272091 Rosa chinensis HOM05D000029 ORTHO05D003879 6.8e-25 119.4 158 45.6
EL10Ac1g00073 Beta vulgaris HOM05D000029 ORTHO05D003879 8.9e-25 119.0 156 44.2
Rhsim06G0097000 Rhododendron simsii HOM05D000029 ORTHO05D003879 8.9e-25 119.0 147 43.5
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 8.9e-25 119.0 125 51.2
CsaV3_7G024110 Cucumis sativus L. HOM05D000029 ORTHO05D003879 1.2e-24 118.6 155 43.9
Dinv41693 Davidia involucrata HOM05D000029 ORTHO05D003879 1.5e-24 118.2 131 49.6
Rhsim10G0034000 Rhododendron simsii HOM05D000029 ORTHO05D003879 2.6e-24 117.5 138 46.4
A08p08250 Brassica napus HOM05D000029 ORTHO05D003879 3.4e-24 117.1 149 46.3
BraA08t32843Z Brassica rapa HOM05D000029 ORTHO05D003879 3.4e-24 117.1 149 46.3
Cfa018196 Carpinus fangiana HOM05D000029 ORTHO05D003879 3.4e-24 117.1 135 50.4
Ciclev10000182m.g Citrus clementina HOM05D000029 ORTHO05D003879 3.4e-24 117.1 158 45.6
Gohir.A09G117200 Gossypium hirsutum HOM05D000029 ORTHO05D003879 3.4e-24 117.1 161 43.5
Gohir.A09G117301 Gossypium hirsutum HOM05D000029 ORTHO05D003879 3.4e-24 117.1 161 43.5
Gohir.D09G114100 Gossypium hirsutum HOM05D000029 ORTHO05D003879 3.4e-24 117.1 160 43.1
Gorai.006G131800 Gossypium raimondii HOM05D000029 ORTHO05D003879 3.4e-24 117.1 160 43.1
CiPaw.15G082400 Carya illinoinensis HOM05D000029 ORTHO05D003879 4.4e-24 116.7 149 45.0
BolC8t47856H Brassica oleracea HOM05D000029 ORTHO05D003879 5.8e-24 116.3 148 46.6
Sabra19G0096100 Salix brachista HOM05D000029 ORTHO05D003879 5.8e-24 116.3 119 47.9
AT1G34420 Arabidopsis thaliana HOM05D000029 ORTHO05D003879 7.5e-24 115.9 149 45.6
Sp1g29610 Schrenkiella parvula HOM05D000029 ORTHO05D003879 1.3e-23 115.2 151 45.0
Haze_17910 Corylus avellana HOM05D000029 ORTHO05D003879 2.9e-23 114.0 135 51.1
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 3.7e-23 113.6 147 46.3
AL1G48980 Arabidopsis lyrata HOM05D000029 ORTHO05D003879 4.9e-23 113.2 149 45.6
BcaC07g37539 Brassica carinata HOM05D000029 ORTHO05D003879 1.4e-22 111.7 107 57.0
Eucgr.F04133 Eucalyptus grandis HOM05D000029 ORTHO05D003879 1.4e-22 111.7 118 46.6
Eucgr.L01480 Eucalyptus grandis HOM05D000029 ORTHO05D003879 1.4e-22 111.7 115 47.0
Lalb_Chr03g0035901 Lupinus albus HOM05D000029 ORTHO05D003879 2.4e-22 110.9 156 42.3
TAR628G0281 Trochodendron aralioides HOM05D000029 ORTHO05D003879 4.1e-22 110.2 151 45.0
Psat0s2229g0040 Pisum sativum HOM05D000029 ORTHO05D003879 7.1e-22 109.4 111 54.1
Thhalv10006707m.g Eutrema salsugineum HOM05D000029 ORTHO05D003879 1.2e-21 108.6 149 43.0
BcaB04g17876 Brassica carinata HOM05D000029 ORTHO05D003879 1.6e-21 108.2 151 44.4
Cfa018200 Carpinus fangiana HOM05D000029 ORTHO05D003879 2.7e-21 107.5 137 48.2
Haze_17915 Corylus avellana HOM05D000029 ORTHO05D003879 1.0e-20 105.5 135 49.6
Carub.0001s3255 Capsella rubella HOM05D000029 ORTHO05D003879 2.3e-20 104.4 148 43.9
RcHm_v2.0_Chr6g0272061 Rosa chinensis HOM05D000029 ORTHO05D003879 3.0e-20 104.0 154 40.9
TAR376G0621 Trochodendron aralioides HOM05D000029 ORTHO05D003879 6.6e-20 102.8 129 45.7
MD05G1041000 Malus domestica HOM05D000029 ORTHO05D003879 8.6e-20 102.4 132 45.5
Potri.013G114200 Populus trichocarpa HOM05D000029 ORTHO05D003879 8.6e-20 102.4 152 42.1
Potri.019G084700 Populus trichocarpa HOM05D000029 ORTHO05D003879 8.6e-20 102.4 154 37.7
Thecc.08G181500 Theobroma cacao HOM05D000029 ORTHO05D003879 1.5e-19 101.7 156 41.7
Nn1g05578 Nelumbo nucifera HOM05D000029 ORTHO05D003879 1.9e-19 101.3 144 43.1
Medtr1g096270 Medicago truncatula HOM05D000029 ORTHO05D003879 2.1e-18 97.8 153 39.9
Duzib116G0477 Durio zibethinus HOM05D000029 ORTHO05D003879 3.6e-18 97.1 124 42.7
AUR62004657 Chenopodium quinoa HOM05D000029 ORTHO05D003879 6.2e-18 96.3 111 48.6
HanXRQChr04g0107461 Helianthus annuus HOM05D000029 ORTHO05D003879 1.4e-17 95.1 153 42.5
Duzib177G1182 Durio zibethinus HOM05D000029 ORTHO05D003879 5.2e-17 93.2 144 39.6
CDE06G2283 Ceratophyllum demersum HOM05D000029 ORTHO05D003879 6.8e-17 92.8 109 49.5
AUR62023574 Chenopodium quinoa HOM05D000029 ORTHO05D003879 6.8e-17 92.8 112 47.3
HanXRQChr04g0107431 Helianthus annuus HOM05D000029 ORTHO05D003879 1.2e-16 92.0 163 40.5
Hund27081 Selenicereus undatus HOM05D000029 ORTHO05D003879 2.6e-16 90.9 138 42.8
VMungo0464G0087 Vigna mungo HOM05D000029 ORTHO05D003879 2.6e-16 90.9 116 45.7
HanXRQChr04g0107451 Helianthus annuus HOM05D000029 ORTHO05D003879 5.8e-16 89.7 164 37.2
THA.LOC104806785 Tarenaya hassleriana HOM05D000029 ORTHO05D003879 1.7e-15 88.2 143 39.9
MBI09_g08446_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 1.9e-14 84.7 141 37.6
MBI17_g15289_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D003879 1.9e-14 84.7 150 37.3
Nn5g27753 Nelumbo nucifera HOM05D000029 ORTHO05D003879 3.5e-13 80.5 153 35.9
Os12g0182300 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D003879 4.6e-13 80.1 122 37.7
VMungo0464G0008 Vigna mungo HOM05D000029 ORTHO05D003879 3.0e-12 77.4 67 56.7
PSO170G3318 Papaver somniferum HOM05D000029 ORTHO05D003879 1.9e-11 74.7 80 50.0
Eucgr.F04130 Eucalyptus grandis HOM05D000029 ORTHO05D003879 9.6e-11 72.4 120 38.3
SEGI_14999 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.6e-10 71.6 150 31.3
SEGI_36696 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 2.8e-10 70.9 161 31.1
PSO782G3570 Papaver somniferum HOM05D000029 ORTHO05D003879 4.7e-10 70.1 148 35.8
Zm00001eb408490 Zea mays HOM05D000029 ORTHO05D003879 4.7e-10 70.1 123 35.0
CARHR033850 Cardamine hirsuta HOM05D000029 ORTHO05D003879 1.1e-09 68.9 92 42.4
PSO170G5730 Papaver somniferum HOM05D000029 ORTHO05D003879 4.4e-08 63.5 146 29.5
Duzib093G0312 Durio zibethinus HOM05D000094 ORTHO05D003883 9.9e-08 62.4 110 36.4
Gohir.A01G200700 Gossypium hirsutum HOM05D000094 ORTHO05D003883 1.7e-07 61.6 108 37.0
Gohir.D01G190700 Gossypium hirsutum HOM05D000094 ORTHO05D003883 1.7e-07 61.6 108 37.0
Gorai.003G034200 Gossypium raimondii HOM05D000029 ORTHO05D001395 1.7e-07 61.6 127 33.9
Actinidia36399 Actinidia chinensis HOM05D000029 ORTHO05D001395 2.9e-07 60.8 130 33.1
CiPaw.07G040300 Carya illinoinensis HOM05D000029 ORTHO05D001395 2.9e-07 60.8 118 37.3
Gohir.A02G147800 Gossypium hirsutum HOM05D000029 ORTHO05D001395 2.9e-07 60.8 126 34.1
SGA_v2.0_scaffold269G46247 Striga asiatica HOM05D000029 ORTHO05D001395 3.8e-07 60.5 121 34.7
DCAR_031907 Daucus carota HOM05D000029 ORTHO05D003879 6.4e-07 59.7 160 30.6
Gohir.D03G032600 Gossypium hirsutum HOM05D000029 ORTHO05D001395 8.4e-07 59.3 126 33.3
PSO782G2115 Papaver somniferum HOM05D000029 ORTHO05D003879 8.4e-07 59.3 58 51.7
SEGI_32570 Sequoiadendron giganteum HOM05D000029 ORTHO05D003879 1.1e-06 58.9 105 33.3
Sed0022739 Sechium edule HOM05D000094 ORTHO05D003883 1.9e-06 58.2 109 36.7
SGA_v2.0_scaffold121G33091 Striga asiatica HOM05D000029 ORTHO05D001395 1.9e-06 58.2 127 33.1
FvH4_1g01000 Fragaria vesca HOM05D000094 ORTHO05D004969 3.2e-06 57.4 103 36.9
arahy.Tifrunner.gnm1.ann1.K92LHN Arachis hypogaea HOM05D000029 ORTHO05D008509 9.3e-06 55.8 116 37.1
SEGI_28714 Sequoiadendron giganteum HOM05D000029 ORTHO05D003879 9.3e-06 55.8 103 33.0


User provided reference genes

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