Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 4.3e-75 284.6 151 100.0
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 4.3e-75 284.6 151 100.0
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 4.3e-75 284.6 151 100.0
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 4.3e-75 284.6 151 100.0
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.9e-35 152.9 92 95.7
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 1.3e-23 113.6 72 75.0
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 2.5e-22 109.4 71 73.2
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 4.2e-22 108.6 68 75.0
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.2e-21 107.1 66 74.2
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 2.7e-21 105.9 66 74.2
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 3.6e-21 105.5 71 70.4
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 6.1e-21 104.8 95 60.0
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 7.9e-21 104.4 54 83.3
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.4e-20 103.6 62 75.8
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 3.0e-20 102.4 70 70.0
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 3.0e-20 102.4 62 74.2
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 5.2e-20 101.7 65 73.8
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 8.8e-20 100.9 69 66.7
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 8.8e-20 100.9 73 65.8
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 1.1e-19 100.5 83 61.4
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 4.4e-19 98.6 87 57.5
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 4.4e-19 98.6 94 53.2
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 4.4e-19 98.6 66 69.7
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 4.4e-19 98.6 62 72.6
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 5.7e-19 98.2 73 63.0
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 5.7e-19 98.2 73 61.6
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 5.7e-19 98.2 73 63.0
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 7.4e-19 97.8 88 56.8
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 7.4e-19 97.8 89 57.3
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 9.7e-19 97.4 66 69.7
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.3e-18 97.1 62 72.6
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 2.2e-18 96.3 70 62.9
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 2.8e-18 95.9 70 62.9
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 2.8e-18 95.9 73 61.6
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 2.8e-18 95.9 95 52.6
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 2.8e-18 95.9 70 65.7
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 2.8e-18 95.9 52 78.8
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 3.7e-18 95.5 93 54.8
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 3.7e-18 95.5 93 53.8
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 3.7e-18 95.5 73 60.3
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 6.3e-18 94.7 73 60.3
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 8.2e-18 94.4 57 70.2
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 8.2e-18 94.4 73 57.5
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 1.1e-17 94.0 92 55.4
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 1.1e-17 94.0 91 53.8
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.1e-17 94.0 73 61.6
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 1.4e-17 93.6 90 54.4
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 1.4e-17 93.6 66 66.7
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 1.8e-17 93.2 69 62.3
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 1.8e-17 93.2 91 52.7
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 1.8e-17 93.2 52 76.9
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 2.4e-17 92.8 72 62.5
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 2.4e-17 92.8 92 51.1
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 3.1e-17 92.4 90 53.3
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 3.1e-17 92.4 71 63.4
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 3.1e-17 92.4 85 55.3
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 4.1e-17 92.0 148 41.2
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 4.1e-17 92.0 73 60.3
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 4.1e-17 92.0 73 60.3
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 4.1e-17 92.0 66 63.6
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 5.3e-17 91.7 84 54.8
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 5.3e-17 91.7 93 52.7
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 5.3e-17 91.7 70 62.9
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 7.0e-17 91.3 66 65.2
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 7.0e-17 91.3 144 41.7
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 7.0e-17 91.3 70 61.4
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 7.0e-17 91.3 90 58.9
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 9.1e-17 90.9 62 64.5
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 9.1e-17 90.9 66 63.6
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 9.1e-17 90.9 85 57.6
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 1.2e-16 90.5 70 60.0
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 1.6e-16 90.1 86 52.3
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 1.6e-16 90.1 73 54.8
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 1.6e-16 90.1 73 56.2
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 2.0e-16 89.7 71 60.6
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 2.0e-16 89.7 69 62.3
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 2.0e-16 89.7 70 58.6
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 2.0e-16 89.7 88 51.1
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 2.6e-16 89.4 66 63.6
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 2.6e-16 89.4 73 58.9
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 3.5e-16 89.0 73 58.9
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 3.5e-16 89.0 73 58.9
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 3.5e-16 89.0 54 68.5
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 3.5e-16 89.0 73 54.8
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 4.5e-16 88.6 80 55.0
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 4.5e-16 88.6 87 52.9
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 5.9e-16 88.2 88 56.8
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 5.9e-16 88.2 87 49.4
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 5.9e-16 88.2 73 57.5
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 7.7e-16 87.8 70 57.1
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 1.0e-15 87.4 66 59.1
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 1.0e-15 87.4 85 55.3
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 1.3e-15 87.0 66 62.1
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 1.3e-15 87.0 90 56.7
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 1.3e-15 87.0 72 59.7
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 1.7e-15 86.7 83 53.0
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 1.7e-15 86.7 69 56.5
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.7e-15 86.7 88 55.7
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 2.2e-15 86.3 85 57.6
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 2.9e-15 85.9 50 72.0
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 3.8e-15 85.5 70 55.7
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 5.0e-15 85.1 66 60.6
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 6.5e-15 84.7 66 60.6
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 6.5e-15 84.7 68 60.3
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 6.5e-15 84.7 68 60.3
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 6.5e-15 84.7 83 50.6
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 6.5e-15 84.7 69 56.5
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 6.5e-15 84.7 61 59.0
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 8.5e-15 84.3 86 50.0
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 8.5e-15 84.3 89 47.2
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 8.5e-15 84.3 73 52.1
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.1e-14 84.0 65 61.5
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.1e-14 84.0 67 56.7
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 1.1e-14 84.0 67 56.7
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 1.5e-14 83.6 66 59.1
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 1.5e-14 83.6 79 51.9
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.5e-14 83.6 69 56.5
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 1.5e-14 83.6 87 52.9
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.9e-14 83.2 95 48.4
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 2.5e-14 82.8 89 48.3
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 4.2e-14 82.0 67 59.7
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 4.2e-14 82.0 54 63.0
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 4.2e-14 82.0 66 59.1
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 4.2e-14 82.0 66 59.1
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 4.2e-14 82.0 93 48.4
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 4.2e-14 82.0 69 56.5
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 5.5e-14 81.6 87 49.4
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 5.5e-14 81.6 66 56.1
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 7.2e-14 81.3 69 58.0
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 9.4e-14 80.9 89 51.7
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 9.4e-14 80.9 86 53.5
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 1.2e-13 80.5 85 51.8
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 1.2e-13 80.5 85 51.8
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 1.2e-13 80.5 85 51.8
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 1.2e-13 80.5 88 47.7
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 1.2e-13 80.5 66 59.1
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 1.2e-13 80.5 91 47.3
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 1.6e-13 80.1 86 55.8
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 2.1e-13 79.7 69 58.0
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.1e-13 79.7 91 47.3
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 2.1e-13 79.7 54 61.1
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 3.6e-13 79.0 87 47.1
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 3.6e-13 79.0 109 45.9
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 3.6e-13 79.0 76 55.3
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 3.6e-13 79.0 84 48.8
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 6.1e-13 78.2 88 48.9
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.0e-12 77.4 86 52.3
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 1.4e-12 77.0 86 46.5
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 1.4e-12 77.0 86 46.5
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 6.7e-12 74.7 66 53.0
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 1.3e-10 70.5 110 37.3
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 1.7e-10 70.1 89 44.9
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 2.2e-10 69.7 86 41.9
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 2.8e-10 69.3 56 57.1
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 3.7e-10 68.9 90 44.4
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.1e-09 67.4 66 48.5
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 2.7e-08 62.8 92 40.2
MCO14G435 Micromonas commoda HOM05D003879 ORTHO05D003858 4.5e-08 62.0 55 50.9
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.3e-07 60.5 65 44.6
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 1.7e-07 60.1 62 50.0
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 3.8e-07 58.9 66 47.0
CBR_g26201 Chara braunii HOM05D003879 ORTHO05D003858 3.8e-07 58.9 66 39.4
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 1.1e-06 57.4 60 43.3
SMO353G0120 Selaginella moellendorffii HOM05D003879 ORTHO05D003858 1.9e-06 56.6 57 47.4
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 2.5e-06 56.2 70 48.6
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 2.5e-06 56.2 81 42.0
A09p52500 Brassica napus HOM05D003879 ORTHO05D003858 3.2e-06 55.8 96 38.5
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 4.2e-06 55.5 85 36.5
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 4.2e-06 55.5 85 36.5
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 4.2e-06 55.5 85 36.5
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 7.2e-06 54.7 84 38.1
AL7G35920 Arabidopsis lyrata HOM05D014944 ORTHO05D017385 9.4e-06 54.3 64 48.4


User provided reference genes

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