Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 0.0e+00 1508.8 792 100.0
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 0.0e+00 1477.6 828 94.7
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 0.0e+00 1417.1 828 90.7
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 0.0e+00 1133.2 829 73.2
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 0.0e+00 1075.1 830 69.6
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 3.1e-310 1068.1 853 69.2
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.1e-302 1041.2 830 67.1
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 2.3e-281 972.2 845 63.6
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.0e-277 957.6 840 62.9
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.9e-275 952.6 832 62.4
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 2.3e-273 945.7 829 62.7
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 5.2e-273 944.5 841 61.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.4e-270 936.4 842 60.8
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.4e-270 935.6 838 61.6
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 6.0e-269 931.0 840 60.8
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 3.0e-268 928.7 857 61.3
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.9e-267 926.0 846 60.4
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.1e-265 920.2 837 60.1
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 1.8e-265 919.5 839 60.4
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.4e-265 919.1 835 61.2
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 2.4e-265 919.1 836 61.1
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 2.4e-265 919.1 852 60.0
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 3.1e-265 918.7 836 60.8
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 5.2e-265 917.9 840 59.6
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.6e-261 906.4 838 59.9
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 7.8e-261 904.0 843 59.7
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.0e-260 903.7 826 59.7
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.3e-260 902.5 838 59.5
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 5.1e-260 901.4 836 58.4
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 5.1e-260 901.4 846 58.6
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 8.7e-260 900.6 828 59.7
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 3.3e-259 898.7 842 59.9
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.1e-258 896.0 827 59.7
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.8e-257 892.9 827 59.5
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 5.3e-257 891.3 842 57.6
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.9e-257 891.0 841 58.7
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.6e-256 887.5 839 58.8
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 3.8e-255 885.2 826 59.2
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.9e-254 882.9 838 58.6
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 3.2e-254 882.1 840 58.3
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 3.2e-254 882.1 843 59.0
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 4.2e-254 881.7 838 58.8
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.6e-253 879.8 843 58.6
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 2.1e-253 879.4 840 57.1
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 4.6e-253 878.2 838 58.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.3e-252 875.9 839 57.9
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 2.3e-252 875.9 833 58.6
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.9e-251 872.8 842 58.3
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 2.5e-251 872.5 835 59.3
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.3e-250 870.2 828 58.2
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-250 870.2 842 58.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.6e-250 869.8 836 59.1
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 3.6e-250 868.6 845 58.1
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 4.8e-250 868.2 835 59.2
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 6.2e-250 867.8 837 57.9
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 6.2e-250 867.8 850 57.4
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.8e-249 866.3 837 58.2
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 3.1e-249 865.5 837 58.3
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.5e-248 863.2 842 58.2
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.3e-247 860.1 842 56.9
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.4e-246 855.9 837 57.7
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 3.0e-244 849.0 832 56.7
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.7e-239 833.2 845 56.7
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 4.2e-238 828.6 845 56.9
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 9.3e-238 827.4 835 56.8
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 9.3e-238 827.4 844 56.9
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 5.1e-236 821.6 845 54.6
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.3e-235 818.5 845 56.0
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.8e-233 813.1 932 52.5
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.0e-231 807.4 836 54.5
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.2e-231 806.2 797 57.0
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 3.8e-231 805.4 841 56.7
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.1e-230 803.9 836 55.9
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.3e-230 800.8 847 55.0
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.0e-228 797.3 843 53.0
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 5.7e-227 791.6 869 54.2
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.6e-224 782.7 792 55.4
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.0e-223 780.8 849 52.3
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.7e-223 780.0 818 53.8
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.1e-222 777.3 825 53.6
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.5e-222 776.2 825 53.3
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.5e-222 776.2 825 53.3
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 3.6e-221 772.3 841 52.7
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 6.1e-221 771.5 839 53.0
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.5e-219 766.9 832 52.6
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.5e-219 766.9 832 52.6
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 9.7e-219 764.2 846 53.5
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 9.1e-217 757.7 845 51.4
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 7.2e-214 748.0 841 51.0
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 5.7e-211 738.4 847 50.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 8.2e-210 734.6 868 50.6
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 6.5e-207 724.9 590 66.3
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.5e-206 723.8 866 49.7
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.2e-203 714.1 843 48.5
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.0e-203 713.4 680 57.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 7.5e-203 711.4 805 52.5
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 3.8e-199 699.1 669 56.7
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 2.2e-194 683.3 845 49.2
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 5.9e-192 675.2 811 48.3
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 1.6e-189 667.2 630 57.9
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.5e-187 660.6 851 46.3
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.4e-171 606.3 575 59.0
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.5e-166 590.1 602 55.1
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 8.9e-156 555.1 870 40.7
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.1e-142 511.5 455 62.4
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 4.9e-138 496.1 829 39.4
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 8.7e-135 485.3 894 37.2
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 7.9e-128 462.2 838 37.1
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.0e-123 447.6 480 52.9
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 4.6e-120 436.4 386 60.9
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.2e-113 413.3 303 71.0
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.7e-110 402.9 453 53.9
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.8e-108 397.9 386 57.8
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 9.1e-108 395.6 448 51.3
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 2.0e-102 377.9 642 37.2
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.5e-99 368.2 287 66.6
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.3e-87 327.8 323 56.3
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 6.5e-82 309.7 200 76.0
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 6.1e-80 303.1 444 42.3
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 8.0e-80 302.8 330 52.7
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.7e-74 285.0 154 92.9
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 8.9e-71 272.7 244 61.1
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.5e-70 271.9 227 62.1
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 9.8e-70 269.2 281 56.6
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.7e-69 268.5 247 59.9
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.6e-59 235.3 223 59.2
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 2.7e-59 234.6 705 29.4
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.6e-57 226.9 189 66.7
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 4.7e-56 223.8 160 71.2
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.9e-52 211.8 189 59.8
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.5e-49 202.2 265 46.0
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 9.9e-38 162.9 209 48.8
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.8e-37 161.0 192 49.0
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.3e-34 152.5 158 56.3
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 2.3e-34 151.8 230 46.5
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.6e-32 145.6 580 25.9
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 2.8e-32 144.8 232 44.8
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-31 142.1 239 43.5
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.0e-31 141.0 134 56.0
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 6.4e-29 133.7 105 62.9
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.9e-28 132.1 180 45.0
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.2e-27 129.4 674 23.9
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.9e-25 122.1 523 24.3
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 4.3e-25 120.9 78 69.2
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-22 112.8 75 74.7
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 3.4e-22 111.3 115 54.8
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 1.6e-19 102.4 102 53.9
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 4.2e-12 77.8 93 48.4
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 7.1e-12 77.0 70 67.1
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-11 76.3 120 45.8
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 2.7e-11 75.1 73 63.0
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.5e-11 74.7 50 64.0
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 6.7e-10 70.5 54 64.8
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.5e-09 69.3 73 47.9
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 3.3e-09 68.2 65 55.4
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.8e-07 62.4 79 45.6
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.2e-06 59.7 152 27.6
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.5e-06 59.3 104 34.6


User provided reference genes

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