Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.4e-130 468.8 229 100.0
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 2.2e-91 339.3 200 82.5
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.6e-89 333.2 193 83.9
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 7.9e-89 330.9 189 84.7
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 7.9e-89 330.9 189 84.7
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.8e-88 329.7 202 79.2
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 3.9e-88 328.6 192 82.8
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.5e-87 326.6 216 75.9
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.5e-87 325.9 189 83.1
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 2.5e-87 325.9 189 82.5
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 4.3e-87 325.1 192 80.2
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.2e-86 322.8 189 83.1
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.2e-86 322.8 192 82.8
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 4.8e-86 321.6 189 82.5
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 4.8e-86 321.6 186 82.3
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.4e-85 320.1 211 75.8
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 5.3e-85 318.2 211 74.4
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.9e-85 317.8 192 84.4
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 9.1e-85 317.4 192 79.2
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-84 317.0 186 81.2
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 1.2e-84 317.0 214 73.8
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.5e-84 316.6 186 81.2
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 2.0e-84 316.2 211 73.5
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.0e-83 313.9 193 79.8
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.2e-82 308.9 200 76.0
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 5.5e-82 308.1 192 77.6
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 5.5e-82 308.1 192 77.6
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 7.2e-82 307.8 189 78.8
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.4e-80 303.5 190 78.4
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.3e-80 302.8 187 80.7
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 5.1e-80 301.6 189 78.8
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 6.7e-80 301.2 222 69.8
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 1.1e-79 300.4 189 76.2
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 2.6e-79 299.3 189 78.3
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 2.6e-79 299.3 188 77.1
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 4.4e-79 298.5 192 76.0
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 5.7e-79 298.1 189 76.7
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 5.7e-79 298.1 189 76.7
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 9.7e-79 297.4 189 77.8
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 2.2e-78 296.2 186 78.0
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 2.2e-78 296.2 189 76.2
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 2.8e-78 295.8 215 70.7
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 2.8e-78 295.8 192 77.1
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 7.0e-77 291.2 192 75.0
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 7.0e-77 291.2 192 76.6
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 9.1e-77 290.8 192 75.0
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 5.9e-76 288.1 190 74.2
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 5.9e-76 288.1 189 76.2
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 7.7e-76 287.7 190 74.7
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 7.7e-76 287.7 211 69.7
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 7.7e-76 287.7 190 71.6
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.3e-75 287.0 192 74.0
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.3e-75 287.0 189 72.5
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 2.9e-75 285.8 192 73.4
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 3.8e-75 285.4 192 74.0
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 5.0e-75 285.0 192 72.4
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 6.5e-75 284.6 211 68.7
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.1e-74 283.9 192 72.9
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 3.2e-74 282.3 190 71.6
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 3.2e-74 282.3 189 74.1
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.2e-73 280.4 186 74.2
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 1.2e-73 280.4 180 78.9
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 2.1e-73 279.6 191 75.9
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 4.7e-73 278.5 187 73.8
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 8.0e-73 277.7 191 71.7
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 8.0e-73 277.7 189 70.9
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 8.0e-73 277.7 191 71.7
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.0e-72 277.3 186 73.1
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 1.0e-72 277.3 192 71.4
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.0e-72 277.3 189 72.0
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.0e-72 277.3 186 73.7
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 3.0e-72 275.8 186 72.6
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.0e-72 275.8 186 72.6
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.5e-71 273.5 186 72.6
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 2.0e-71 273.1 191 70.7
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 2.0e-71 273.1 192 70.3
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.6e-71 272.7 186 72.0
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 4.4e-71 271.9 151 86.1
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 5.7e-71 271.6 192 69.8
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 9.7e-71 270.8 186 71.5
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.7e-70 270.0 180 75.6
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 2.2e-70 269.6 189 70.4
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 3.7e-70 268.9 192 69.3
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 6.3e-70 268.1 211 65.9
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 2.4e-69 266.2 186 69.9
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 4.1e-69 265.4 189 68.8
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 4.1e-69 265.4 186 69.9
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 7.0e-69 264.6 191 68.1
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.6e-68 263.5 189 68.3
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.5e-68 262.3 152 83.6
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 3.5e-68 262.3 186 67.7
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 6.5e-67 258.1 192 66.7
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.9e-66 256.5 192 67.2
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 5.5e-66 255.0 189 67.7
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 1.6e-65 253.4 155 78.1
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 3.6e-65 252.3 196 65.3
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.3e-64 249.6 215 60.9
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 2.6e-63 246.1 186 66.7
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 3.4e-63 245.7 190 66.3
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.4e-61 240.4 191 67.0
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 5.9e-60 235.0 155 76.8
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 6.3e-54 214.9 137 73.7
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 4.5e-52 208.8 118 83.1
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 6.6e-51 204.9 128 78.9
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.5e-50 203.0 193 60.1
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 1.8e-48 196.8 189 53.4
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 4.9e-46 188.7 129 75.2
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 9.5e-42 174.5 121 72.7
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.0e-35 154.5 164 48.2
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.8e-31 137.9 178 47.8
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 2.2e-30 136.7 199 39.7
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 2.3e-24 116.7 90 67.8
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 5.2e-24 115.5 65 86.2
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.5e-23 114.0 80 72.5
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-22 110.9 84 67.9
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 1.1e-21 107.8 67 73.1
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 7.1e-21 105.1 70 72.9
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.1e-18 97.8 135 40.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 9.9e-15 84.7 107 40.2
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 4.9e-14 82.4 55 67.3
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 1.1e-10 71.2 65 60.0
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.3e-09 67.8 136 33.8
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.1e-08 64.7 40 77.5
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 4.4e-07 59.3 138 30.4
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 4.4e-07 59.3 38 73.7
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.3e-06 57.8 145 33.1
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.7e-06 57.4 112 35.7
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.7e-06 57.4 136 30.1
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.7e-06 57.4 139 30.2
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 2.9e-06 56.6 30 86.7
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.9e-06 55.8 134 29.1
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 4.9e-06 55.8 132 33.3
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 6.4e-06 55.5 132 32.6
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 8.4e-06 55.1 112 33.0


User provided reference genes

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