Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.5e-275 950.7 488 100.0
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.8e-208 728.8 498 80.9
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.0e-138 497.7 498 56.6
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 6.8e-138 495.0 503 55.1
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 2.4e-135 486.5 504 55.4
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.2e-134 484.2 500 55.0
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.0e-133 481.1 507 52.9
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 5.5e-132 475.3 501 54.1
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.2e-129 467.6 501 52.9
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 2.6e-129 466.5 498 53.8
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 4.4e-129 465.7 497 52.7
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.3e-128 464.2 502 51.0
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.1e-127 461.1 501 53.1
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 3.1e-127 459.5 502 52.4
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 4.1e-127 459.1 500 51.4
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 4.1e-127 459.1 497 52.3
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 5.4e-127 458.8 360 68.9
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 5.4e-127 458.8 493 52.7
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 7.0e-127 458.4 506 53.6
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 9.2e-127 458.0 491 54.8
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 9.2e-127 458.0 502 51.4
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 2.7e-126 456.4 500 52.4
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.5e-126 455.7 502 51.2
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.3e-125 454.1 495 52.3
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.7e-125 453.8 514 51.4
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 8.6e-125 451.4 506 50.6
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.1e-124 451.1 398 60.6
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.3e-124 449.1 497 50.3
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 9.5e-124 448.0 503 50.9
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.2e-123 447.6 499 49.9
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.2e-123 447.6 501 52.1
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.1e-123 446.8 499 49.7
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 2.1e-123 446.8 500 51.6
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 8.0e-123 444.9 503 50.7
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.3e-122 443.4 505 50.7
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 2.3e-122 443.4 505 50.3
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 4.0e-122 442.6 501 51.7
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.5e-121 440.7 484 52.3
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 7.5e-121 438.3 498 51.6
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.3e-120 437.6 503 52.3
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 3.7e-120 436.0 506 51.4
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 4.9e-120 435.6 509 50.9
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.1e-119 434.5 509 50.7
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.8e-119 433.7 499 50.7
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 2.4e-119 433.3 502 49.8
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 7.0e-119 431.8 479 54.1
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.6e-118 430.6 502 51.2
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.0e-117 425.6 506 48.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.9e-116 423.7 502 50.2
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 5.6e-116 422.2 503 49.1
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.2e-115 418.7 444 53.8
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.0e-114 417.9 506 47.8
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 4.0e-114 416.0 503 48.3
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.2e-114 415.6 490 49.6
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 6.8e-114 415.2 503 48.3
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 8.9e-114 414.8 507 48.9
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.5e-113 414.1 506 47.4
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 1.5e-113 414.1 415 56.4
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 2.0e-113 413.7 503 48.1
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 2.0e-113 413.7 503 48.1
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.6e-113 413.3 504 49.0
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 3.4e-113 412.9 503 47.7
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 5.8e-113 412.1 504 47.8
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.7e-112 410.6 504 47.8
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.4e-111 407.5 491 48.9
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.4e-111 407.5 506 47.8
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.4e-111 406.8 464 51.3
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 4.1e-111 406.0 500 49.4
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 7.0e-111 405.2 501 48.5
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 9.2e-111 404.8 437 52.9
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 3.9e-109 399.4 454 53.1
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.3e-108 395.2 444 52.3
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 9.5e-108 394.8 507 48.9
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 9.5e-108 394.8 500 47.8
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 4.7e-107 392.5 720 37.1
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 4.4e-105 386.0 498 47.4
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 7.5e-105 385.2 415 53.5
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.2e-103 379.8 583 40.8
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.0e-102 375.6 348 62.1
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.3e-101 374.4 470 47.4
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 6.6e-101 372.1 435 49.7
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 3.3e-100 369.8 416 51.4
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 6.2e-99 365.5 508 45.3
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.6e-97 360.1 436 48.2
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 7.6e-97 358.6 433 48.7
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.2e-96 357.1 293 66.9
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.1e-95 354.8 566 41.2
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 4.6e-94 349.4 473 45.2
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.6e-91 340.9 417 49.9
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.4e-90 337.8 414 49.0
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.9e-87 327.4 329 55.9
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.2e-87 326.6 504 43.7
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 3.9e-85 319.7 394 48.5
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 9.6e-84 315.1 330 53.3
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 2.8e-83 313.5 435 44.8
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 8.1e-83 312.0 529 41.2
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 3.4e-81 306.6 412 46.8
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 3.4e-81 306.6 519 40.1
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 4.5e-81 306.2 507 41.4
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 7.6e-81 305.4 330 52.4
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.6e-78 297.7 421 44.9
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.2e-75 285.8 303 53.1
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 3.1e-74 283.5 385 43.6
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 4.0e-74 283.1 546 39.4
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 4.5e-73 279.6 374 44.9
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 4.2e-71 273.1 300 50.7
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.5e-70 270.0 335 48.1
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 3.0e-69 266.9 376 45.7
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 7.1e-63 245.7 244 54.5
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 2.5e-60 237.3 491 36.5
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.5e-60 237.3 280 48.6
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 2.4e-58 230.7 561 33.5
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.2e-55 220.3 203 58.1
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.4e-50 204.9 334 39.5
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.9e-48 197.2 322 40.4
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.2e-40 171.0 204 50.5
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.7e-36 156.4 161 52.8
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.1e-34 152.1 566 29.5
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.3e-34 149.8 350 36.3
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 7.7e-33 146.0 166 51.2
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.0e-32 145.6 590 28.5
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.5e-32 142.9 131 58.8
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.0e-29 134.0 138 51.4
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 5.0e-24 116.7 413 28.8
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 9.4e-23 112.5 70 80.0
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 9.4e-23 112.5 75 74.7
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.2e-22 112.1 187 40.1
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 8.0e-22 109.4 138 44.2
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 7.0e-18 96.3 106 51.9
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 9.1e-18 95.9 84 63.1
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 1.6e-14 85.1 136 42.6
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.8e-10 71.6 54 70.4
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 3.1e-10 70.9 129 39.5
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.0e-10 69.7 98 42.9
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.0e-10 69.7 98 42.9
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.2e-09 68.9 81 49.4
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-09 68.6 98 41.8
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.9e-09 66.6 98 42.9
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 3.8e-08 63.9 44 63.6
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 1.5e-07 62.0 104 39.4


User provided reference genes

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