Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 4.4e-90 335.1 242 100.0
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 1.8e-46 190.3 286 66.4
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 5.9e-42 175.3 265 69.1
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.7e-41 173.7 294 61.9
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.9e-41 172.9 294 61.9
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.5e-41 171.8 294 61.6
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 8.5e-41 171.4 281 64.1
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 1.9e-40 170.2 279 61.6
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 3.2e-40 169.5 260 67.3
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 4.2e-40 169.1 292 62.7
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.2e-40 169.1 292 62.7
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 5.5e-40 168.7 266 64.3
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 9.4e-40 167.9 275 65.5
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 9.4e-40 167.9 268 67.2
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 2.1e-39 166.8 284 64.1
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 3.6e-39 166.0 269 56.5
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 4.7e-39 165.6 271 63.1
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 7.9e-39 164.9 271 65.3
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 5.1e-38 162.2 268 67.2
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 5.1e-38 162.2 247 66.0
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 4.4e-37 159.1 271 63.1
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 4.4e-37 159.1 271 63.1
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 5.7e-37 158.7 295 60.3
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 7.4e-37 158.3 273 61.5
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 9.7e-37 157.9 287 62.0
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.2e-36 156.8 262 67.9
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.7e-36 156.0 183 54.1
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 8.2e-36 154.8 261 65.1
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 8.2e-36 154.8 253 66.8
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 8.2e-36 154.8 253 66.8
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 1.1e-35 154.5 267 63.7
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.1e-35 152.9 307 60.3
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 3.1e-35 152.9 250 67.2
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 4.1e-35 152.5 272 61.8
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.3e-35 152.1 257 66.1
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 7.0e-35 151.8 280 61.4
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 1.6e-34 150.6 257 67.3
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.6e-34 150.6 253 66.0
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 1.6e-34 150.6 266 65.8
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 3.5e-34 149.4 274 60.6
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.5e-34 149.4 257 64.2
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 3.5e-34 149.4 246 66.7
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.5e-34 149.1 275 64.0
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 4.5e-34 149.1 252 62.3
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.9e-34 148.7 260 64.2
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 7.7e-34 148.3 250 67.6
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 7.7e-34 148.3 189 55.6
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.0e-33 147.9 240 67.9
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.7e-33 147.1 260 53.5
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.7e-33 147.1 263 65.8
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 1.5e-32 144.1 262 62.2
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 1.5e-32 144.1 261 65.1
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.9e-32 143.7 249 68.3
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 1.9e-32 143.7 255 64.3
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 1.9e-32 143.7 254 63.8
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 2.5e-32 143.3 273 59.0
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 2.5e-32 143.3 268 64.6
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 2.5e-32 143.3 252 66.3
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.5e-32 143.3 261 64.0
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 3.2e-32 142.9 179 52.5
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 4.2e-32 142.5 257 63.4
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 5.5e-32 142.1 277 61.0
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.6e-31 140.6 252 51.2
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 1.6e-31 140.6 279 60.6
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.6e-31 140.6 165 57.6
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 2.1e-31 140.2 255 62.7
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.1e-31 140.2 255 65.1
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 3.6e-31 139.4 183 51.4
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 4.7e-31 139.0 295 58.0
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 4.7e-31 139.0 259 64.1
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.1e-31 138.7 265 61.5
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 1.8e-30 137.1 269 62.5
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.8e-30 137.1 163 54.0
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 2.3e-30 136.7 277 61.4
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 2.3e-30 136.7 300 56.7
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.3e-30 136.7 267 61.8
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.3e-30 136.7 308 55.8
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.6e-29 133.3 174 51.7
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 3.3e-29 132.9 275 58.9
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 3.3e-29 132.9 241 61.8
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 4.4e-29 132.5 263 60.8
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 7.5e-29 131.7 255 62.7
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 7.5e-29 131.7 231 65.4
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 9.7e-29 131.3 253 64.0
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 1.3e-28 131.0 285 57.9
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 2.2e-28 130.2 311 56.6
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.8e-28 129.8 266 60.5
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.7e-28 129.4 293 57.7
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 8.2e-28 128.3 249 65.5
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 8.2e-28 128.3 264 49.2
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 1.1e-27 127.9 200 48.0
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 2.4e-27 126.7 213 70.9
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 2.4e-27 126.7 263 60.8
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 3.1e-27 126.3 307 52.1
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 3.1e-27 126.3 279 43.0
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 4.1e-27 125.9 250 65.6
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 4.1e-27 125.9 265 58.9
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 5.3e-27 125.6 253 60.9
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 7.0e-27 125.2 250 57.2
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 7.0e-27 125.2 270 61.9
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 9.1e-27 124.8 248 62.5
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 2.7e-26 123.2 287 58.5
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 3.5e-26 122.9 260 48.5
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 4.5e-26 122.5 170 47.6
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 7.7e-26 121.7 259 59.8
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.3e-25 120.9 265 59.6
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.2e-25 120.2 260 58.1
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.2e-25 120.2 254 51.2
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 2.9e-25 119.8 264 60.2
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 6.5e-25 118.6 250 46.4
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 6.5e-25 118.6 250 46.4
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.1e-24 117.9 171 52.0
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 1.5e-24 117.5 297 52.5
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.9e-24 117.1 164 50.0
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 3.2e-24 116.3 270 58.9
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 4.2e-24 115.9 263 57.8
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 5.5e-24 115.5 250 54.4
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 5.5e-24 115.5 250 54.4
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 9.4e-24 114.8 264 57.2
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.2e-23 114.4 237 37.1
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.6e-23 114.0 136 51.5
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.6e-23 114.0 276 58.0
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.6e-23 114.0 314 51.3
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.6e-23 114.0 328 49.4
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 2.1e-23 113.6 234 59.0
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 2.1e-23 113.6 254 61.0
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.0e-22 111.3 269 56.9
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 1.0e-22 111.3 224 39.7
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.8e-22 110.5 259 57.9
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 2.3e-22 110.2 241 56.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 4.0e-22 109.4 296 53.4
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 4.0e-22 109.4 235 51.1
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 6.8e-22 108.6 250 59.2
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 6.8e-22 108.6 272 56.2
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 2.6e-21 106.7 302 55.0
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 3.4e-21 106.3 256 56.2
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 3.4e-21 106.3 256 56.2
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 3.4e-21 106.3 256 56.2
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 3.4e-21 106.3 209 40.7
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 4.4e-21 105.9 260 57.7
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 5.7e-21 105.5 228 61.8
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 9.8e-21 104.8 255 56.9
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 4.8e-20 102.4 256 55.9
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 4.8e-20 102.4 260 56.5
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 8.3e-20 101.7 256 55.9
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 8.3e-20 101.7 163 78.5
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 8.3e-20 101.7 246 56.1
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 4.1e-19 99.4 171 42.1
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.6e-18 97.4 274 53.3
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 1.6e-18 97.4 260 55.0
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.7e-18 96.7 133 49.6
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 4.5e-18 95.9 261 56.7
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.7e-17 94.0 123 52.0
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 2.5e-16 90.1 241 57.7
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.2e-15 87.8 273 52.4
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.2e-15 87.8 223 43.0
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.7e-13 79.0 251 50.6
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 5.7e-13 79.0 250 40.8
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 6.3e-12 75.5 225 41.3
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 3.1e-11 73.2 241 36.1
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 5.4e-11 72.4 141 47.5
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 1.6e-10 70.9 83 57.8
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 5.9e-10 68.9 228 50.4
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 1.5e-08 64.3 253 50.6
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.5e-08 63.5 38 78.9


User provided reference genes

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