Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2712.9 1378 100.0
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2509.9 1383 90.6
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2509.2 1383 90.7
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2504.6 1384 90.3
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2502.2 1384 90.2
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2500.7 1384 90.0
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2500.3 1383 89.7
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2499.5 1384 90.2
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2499.5 1383 90.2
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2498.4 1383 90.2
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2497.6 1385 90.3
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2497.2 1384 89.9
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2496.5 1384 90.0
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2494.9 1384 90.0
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2494.5 1384 90.0
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2493.8 1383 89.7
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2491.8 1398 89.1
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2490.7 1386 89.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2486.1 1384 89.8
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1386 89.3
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2485.3 1386 89.4
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2484.9 1385 89.3
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2482.6 1383 89.9
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2482.2 1383 89.3
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2481.8 1384 89.5
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2480.7 1384 89.2
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2479.1 1382 89.9
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2478.7 1385 89.5
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2477.2 1384 89.0
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2476.8 1388 88.9
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2476.0 1384 89.1
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1388 88.8
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1384 89.2
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1383 89.5
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2474.9 1384 89.1
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2474.5 1383 89.6
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2474.5 1382 88.9
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2474.5 1383 89.6
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2474.1 1384 88.9
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2473.7 1383 89.5
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2473.4 1384 89.2
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2473.0 1383 89.6
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2472.6 1383 89.2
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2471.4 1383 89.5
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2469.1 1382 88.7
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2468.0 1382 88.6
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2466.8 1384 88.7
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2466.0 1384 88.8
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2465.6 1384 89.0
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2465.6 1383 88.9
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2463.3 1383 88.9
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2463.3 1384 88.4
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2463.3 1384 88.5
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2463.0 1383 88.7
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2462.6 1383 88.3
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2459.9 1383 88.6
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2459.9 1383 88.6
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2459.5 1384 89.1
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2457.9 1386 88.1
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2457.6 1399 87.8
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2452.2 1385 88.4
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2451.0 1385 87.9
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2448.3 1410 87.0
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2448.3 1383 87.9
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2442.9 1385 87.7
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2442.2 1385 87.8
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2441.8 1385 87.8
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2432.5 1385 87.4
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2429.8 1446 84.4
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2428.7 1335 90.4
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2426.7 1383 87.8
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2424.4 1383 88.3
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1384 87.8
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2411.3 1392 86.6
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2406.3 1384 86.5
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2404.4 1384 86.7
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2399.4 1383 86.5
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2397.9 1384 86.1
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2397.5 1384 86.8
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2397.5 1384 86.8
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2397.1 1384 86.7
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2396.7 1384 86.4
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2395.5 1384 86.6
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2395.5 1384 86.6
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2394.4 1384 86.1
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2392.5 1385 86.7
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2392.1 1384 86.1
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2391.7 1383 86.5
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2389.4 1383 85.6
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2389.0 1383 85.5
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2379.0 1355 87.2
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2337.0 1408 84.7
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2330.8 1381 84.6
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2325.1 1386 84.5
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2323.9 1383 84.8
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2320.8 1367 84.6
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2320.0 1385 83.9
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2248.0 1330 82.9
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2243.0 1259 88.7
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2229.9 1259 88.6
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2209.1 1262 87.6
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2207.9 1347 83.4
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2194.9 1333 81.3
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2164.8 1353 78.9
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2159.4 1331 78.9
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2144.0 1331 79.1
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2144.0 1331 79.1
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2140.2 1352 77.4
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1991.5 1120 88.8
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1973.7 1381 75.7
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1972.2 1108 89.0
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1894.0 1332 70.0
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1876.7 1401 72.3
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1859.0 1334 68.4
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1696.8 914 91.7
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1681.0 913 91.0
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1632.8 896 90.4
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1488.0 808 90.5
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1487.6 809 90.4
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1148.3 690 84.2
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1095.1 676 81.2
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 8.7e-300 1034.2 670 79.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.8e-297 1026.5 571 87.4
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 2.4e-265 919.8 1198 44.3
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 4.1e-265 919.1 588 78.9
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 2.8e-229 800.0 471 85.8
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 6.4e-226 788.9 471 84.7
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.9e-223 779.6 471 83.4
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 4.9e-218 762.7 470 83.6
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 7.6e-203 712.2 400 85.5
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 2.4e-172 610.9 1390 31.5
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 4.4e-158 563.5 1511 29.5
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.0e-111 407.5 1269 29.0
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 2.1e-91 342.0 175 97.1
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 6.7e-66 257.3 147 83.7
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 2.2e-61 242.3 123 95.9
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.4e-47 196.4 107 90.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.6e-41 175.6 176 56.2
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 2.7e-30 139.0 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 4.2e-28 131.7 99 68.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 4.0e-26 125.2 91 70.3
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 8.6e-21 107.5 61 86.9


User provided reference genes

Program Settings