Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 1.2e-153 546.6 301 100.0
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 4.5e-124 448.4 305 79.0
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 3.1e-117 425.6 326 74.8
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.1e-114 417.2 300 78.7
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 5.1e-112 408.3 306 74.8
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.5e-111 406.0 308 72.4
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 2.8e-110 402.5 308 75.0
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 4.8e-110 401.7 307 71.7
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.1e-109 398.7 306 73.9
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 6.9e-109 397.9 308 70.8
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.2e-108 397.1 309 72.8
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.5e-108 396.7 307 72.6
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 2.2e-107 392.9 308 71.1
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.0e-107 391.7 308 72.4
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 5.0e-107 391.7 308 72.7
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 6.5e-107 391.3 308 72.7
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.4e-106 390.2 316 73.1
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 2.5e-106 389.4 308 69.8
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.2e-105 387.1 305 70.5
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 2.1e-105 386.3 308 71.4
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 7.9e-105 384.4 309 73.5
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 3.9e-104 382.1 311 68.8
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 6.7e-104 381.3 303 71.0
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 6.7e-104 381.3 301 70.8
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 6.7e-104 381.3 301 70.8
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 6.7e-104 381.3 303 73.9
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.5e-103 380.2 302 71.9
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 2.6e-103 379.4 304 71.1
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 7.4e-103 377.9 301 71.8
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 7.4e-103 377.9 301 71.8
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.8e-102 375.9 302 69.9
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 8.2e-102 374.4 301 71.4
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 3.1e-101 372.5 303 69.6
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.1e-101 372.1 312 67.6
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 5.3e-101 371.7 306 68.6
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 1.2e-100 370.5 306 71.6
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.2e-100 370.5 303 71.3
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.5e-100 370.2 308 69.5
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.0e-100 369.8 302 69.2
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 2.6e-100 369.4 303 68.6
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 7.7e-100 367.9 302 69.2
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 7.7e-100 367.9 302 69.2
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.3e-99 367.1 300 68.7
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 1.7e-99 366.7 299 73.6
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 2.9e-99 365.9 304 69.4
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.8e-99 365.5 309 68.6
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 6.5e-99 364.8 300 68.3
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 8.5e-99 364.4 307 68.7
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 1.4e-98 363.6 303 69.3
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 4.2e-98 362.1 306 70.6
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.6e-97 360.1 307 66.8
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 2.1e-97 359.8 300 67.7
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 4.7e-97 358.6 311 65.6
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 4.7e-97 358.6 304 72.0
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 4.7e-97 358.6 304 68.1
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 6.1e-97 358.2 306 66.7
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.8e-96 356.7 307 65.8
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 8.8e-96 354.4 311 68.5
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.1e-95 354.0 307 65.5
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 4.4e-95 352.1 301 69.1
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 5.7e-95 351.7 298 69.1
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 7.4e-95 351.3 302 70.9
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 9.7e-95 350.9 312 68.9
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.7e-94 350.1 303 68.6
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 3.7e-94 349.0 304 70.1
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.7e-94 349.0 310 68.7
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 6.3e-94 348.2 303 68.6
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.8e-93 346.7 298 69.5
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.4e-93 346.3 291 71.5
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 3.1e-93 345.9 312 67.3
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 4.1e-93 345.5 303 68.0
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 5.3e-93 345.1 308 68.8
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 9.1e-93 344.4 301 68.4
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.6e-92 343.6 295 70.5
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.6e-92 343.6 326 62.6
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 2.0e-92 343.2 304 68.4
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 4.5e-92 342.0 302 64.9
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 5.9e-92 341.7 312 67.0
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 7.7e-92 341.3 306 67.6
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.7e-92 341.3 310 67.1
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.0e-91 340.9 301 69.1
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 1.3e-91 340.5 295 70.2
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.3e-91 340.5 309 65.0
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 1.3e-91 340.5 302 65.2
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.7e-91 340.1 305 68.2
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.7e-91 340.1 305 68.2
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.7e-91 340.1 307 62.9
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 2.2e-91 339.7 308 64.3
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 2.9e-91 339.3 303 67.3
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 3.8e-91 339.0 305 67.9
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 8.5e-91 337.8 294 69.0
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 2.5e-90 336.3 300 68.0
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 3.2e-90 335.9 305 67.9
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 5.5e-90 335.1 304 67.8
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 5.5e-90 335.1 299 68.9
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 7.2e-90 334.7 312 65.4
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 1.2e-89 334.0 288 71.2
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 2.7e-89 332.8 298 65.4
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 4.7e-89 332.0 312 67.0
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 4.7e-89 332.0 299 66.9
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 2.3e-88 329.7 307 64.2
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 8.8e-88 327.8 298 68.5
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.5e-87 327.0 303 63.4
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 7.5e-87 324.7 306 65.0
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 1.3e-86 323.9 288 70.5
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 2.2e-86 323.2 288 70.5
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 2.8e-86 322.8 305 66.9
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 8.2e-86 321.2 301 65.8
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 2.4e-85 319.7 294 69.0
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 3.1e-85 319.3 306 61.8
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.3e-85 318.5 298 64.4
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 9.1e-85 317.8 306 64.1
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 2.0e-84 316.6 312 61.5
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.9e-83 312.8 307 59.9
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 8.8e-80 301.2 300 62.0
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 3.4e-79 299.3 240 70.8
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 4.2e-74 282.3 241 68.5
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 7.2e-74 281.6 314 54.5
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 2.9e-67 259.6 212 69.3
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.1e-56 223.0 299 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 6.8e-56 221.9 300 53.3
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.6e-49 200.7 242 57.0
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 6.2e-49 198.7 215 58.1
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.4e-48 197.6 211 62.6
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.4e-48 197.6 284 50.7
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 6.8e-48 195.3 187 60.4
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 7.5e-47 191.8 302 46.0
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 7.5e-47 191.8 290 49.7
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 2.6e-39 166.8 325 41.2
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.4e-37 161.0 292 42.1
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.7e-35 154.1 117 67.5
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 8.7e-35 151.8 266 42.9
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 6.2e-33 145.6 112 65.2
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.5e-31 141.0 290 35.9
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 2.2e-30 137.1 321 37.1
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 7.1e-29 132.1 299 39.1
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 6.6e-27 125.6 128 57.0
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 6.6e-27 125.6 92 68.5
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 9.0e-24 115.2 80 75.0
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 5.4e-21 105.9 164 41.5
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 7.9e-20 102.1 72 70.8
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.0e-19 101.7 158 44.9
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.0e-19 101.7 158 44.9
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.0e-19 101.7 158 44.9
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 1.0e-19 101.7 212 37.7
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 3.0e-19 100.1 80 62.5
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.9e-18 97.4 124 42.7
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 4.3e-18 96.3 129 51.2
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 7.4e-18 95.5 63 81.0
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 3.1e-16 90.1 84 63.1
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 2.9e-14 83.6 76 56.6
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.3e-10 69.7 160 42.5
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 2.1e-09 67.4 94 43.6
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.0e-06 58.5 59 61.0


User provided reference genes

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