Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 0.0e+00 2485.3 1270 100.0
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 0.0e+00 1222.6 1332 55.0
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 0.0e+00 1120.9 1339 52.1
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 4.1e-304 1048.5 1337 51.4
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 4.8e-228 795.8 1357 41.7
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 4.7e-207 726.1 1373 39.7
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.3e-206 723.8 1373 39.6
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 1.4e-171 608.2 1309 36.4
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 2.3e-169 600.9 1203 38.2
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 5.6e-168 596.3 1374 36.2
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 3.8e-164 583.6 1270 36.9
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 6.6e-161 572.8 1371 36.3
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.4e-155 555.1 1316 36.3
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 2.4e-155 554.3 1372 35.7
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.5e-152 544.3 1306 36.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 2.1e-151 541.2 1340 35.1
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 1.3e-148 531.9 1324 36.9
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 9.3e-147 525.8 1409 34.9
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 1.2e-146 525.4 1177 35.9
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.4e-142 511.9 1302 34.4
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 5.1e-137 493.4 1363 34.6
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 2.1e-135 488.0 1428 33.7
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 3.1e-134 484.2 1264 34.0
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.2e-133 482.3 1351 32.4
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 2.0e-133 481.5 1450 33.5
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.7e-132 478.4 1374 32.8
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.7e-132 478.4 1234 33.4
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 6.1e-130 469.9 1337 32.2
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.3e-128 463.8 1354 33.2
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 7.7e-125 453.0 1435 31.8
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 1.4e-123 448.7 1359 33.2
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 4.2e-123 447.2 1378 33.6
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 5.5e-123 446.8 1350 32.6
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 7.2e-123 446.4 1208 33.2
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 9.4e-123 446.0 1433 31.7
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.6e-122 445.3 1395 32.1
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.4e-121 442.2 1202 32.9
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 2.6e-120 438.0 1400 32.0
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 5.7e-120 436.8 1404 31.7
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 9.7e-120 436.0 1321 33.2
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 4.1e-118 430.6 1413 32.0
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 6.9e-118 429.9 1369 32.1
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.6e-117 427.9 1219 32.0
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 2.6e-117 427.9 1265 34.2
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.0e-116 426.0 1057 36.5
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 6.5e-116 423.3 1210 32.8
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 8.5e-116 422.9 1385 32.4
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.1e-115 422.5 1328 33.7
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 4.7e-114 417.2 1375 31.1
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 1.0e-113 416.0 1424 32.2
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 6.7e-113 413.3 1215 31.9
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.3e-111 409.1 1370 32.2
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.0e-109 401.7 1369 32.8
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 1.0e-108 399.4 1309 32.2
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.7e-108 398.7 1374 31.2
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 2.2e-108 398.3 1377 32.5
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.2e-108 398.3 1376 32.3
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.8e-108 397.5 1377 32.3
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 8.5e-108 396.4 1384 31.1
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.2e-106 392.5 923 36.4
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.0e-105 389.4 1327 31.9
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 3.0e-105 387.9 1227 30.6
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 9.7e-104 382.9 1378 30.8
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.0e-98 363.2 1022 34.5
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.8e-94 352.1 1404 30.0
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 4.0e-89 334.3 1358 29.7
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 1.2e-88 332.8 790 35.3
SGA_v2.0_scaffold44G16695 Striga asiatica HOM05D000283 ORTHO05D006673 6.1e-82 310.5 1265 30.6
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 5.7e-80 303.9 1410 28.3
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 2.2e-79 302.0 1063 30.1
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.8e-78 298.9 1251 29.5
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 2.3e-76 292.0 1248 28.6
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 6.8e-73 280.4 570 35.3
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 9.8e-72 276.6 289 52.2
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.3e-68 266.2 1383 26.2
SalBow8G5252 Salvia bowleyana HOM05D022483 ORTHO05D006673 7.5e-64 250.4 135 96.3
SalBow1G1128 Salvia bowleyana HOM05D022483 ORTHO05D006673 1.7e-63 249.2 135 96.3
SalBow5G2092 Salvia bowleyana HOM05D022483 ORTHO05D006673 2.9e-63 248.4 135 96.3
SalBow8G4020 Salvia bowleyana HOM05D022483 ORTHO05D006673 4.1e-62 244.6 135 94.8
SalBow8G4750 Salvia bowleyana HOM05D022483 ORTHO05D006673 4.1e-62 244.6 135 94.8
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 4.7e-58 231.1 1388 26.7
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 2.9e-55 221.9 670 32.4
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 1.4e-54 219.5 1112 27.8
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.7e-52 210.3 317 42.0
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.5e-51 209.5 1203 28.7
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 1.9e-46 192.6 675 32.1
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.4e-46 192.2 1359 25.5
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.0e-44 186.8 467 34.9
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 1.0e-44 186.8 1017 28.2
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 1.3e-44 186.4 674 31.3
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 8.7e-44 183.7 678 30.1
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.5e-43 182.2 699 29.9
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.4e-41 176.4 1290 27.5
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 5.8e-40 171.0 885 27.3
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.2e-37 163.3 334 39.8
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 7.9e-37 160.6 401 34.2
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 1.5e-35 156.4 377 35.3
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 2.1e-34 152.5 776 28.9
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.4e-33 149.1 535 29.3
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 5.3e-33 147.9 387 35.1
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 9.9e-32 143.7 724 27.9
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.3e-31 143.3 1304 25.4
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.2e-31 142.5 730 28.2
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 1.3e-28 133.3 583 31.2
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.4e-25 122.5 488 29.3
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 1.2e-24 120.2 364 32.7
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 2.2e-23 115.9 487 27.3
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 2.2e-23 115.9 310 33.9
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 2.9e-23 115.5 1242 25.4
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 3.8e-23 115.2 492 28.5
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 1.1e-22 113.6 478 27.4
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 3.2e-22 112.1 1177 24.0
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.5e-21 108.6 212 38.2
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 6.0e-21 107.8 411 29.2
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 3.9e-20 105.1 482 28.0
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 2.5e-19 102.4 247 34.8
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 5.7e-19 101.3 1276 23.1
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 5.7e-19 101.3 547 26.5
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 6.9e-17 94.4 965 25.4
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 9.0e-17 94.0 1323 23.0
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 5.9e-16 91.3 1266 23.4
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 5.9e-16 91.3 146 38.4
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 1.7e-15 89.7 1346 23.5
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 2.5e-14 85.9 690 25.7
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.2e-14 85.5 191 35.1
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.4e-14 84.0 148 40.5
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.6e-13 81.6 90 46.7
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 6.1e-13 81.3 685 25.1
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.0e-12 79.0 796 25.8
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 5.1e-12 78.2 1399 22.4
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 3.3e-11 75.5 1280 22.7
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.3e-11 75.5 410 29.0
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 2.2e-10 72.8 1338 23.2
PGSC0003DMG400011484 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.8e-09 69.7 164 34.1
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 2.4e-09 69.3 1019 23.0
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 1.5e-08 66.6 1269 22.6
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 3.4e-08 65.5 357 26.6
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 2.9e-07 62.4 1274 22.5
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 5.0e-07 61.6 1355 22.4
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 6.5e-07 61.2 687 25.0


User provided reference genes

Program Settings