Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 0.0e+00 1128.6 591 100.0
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 2.6e-277 958.4 597 82.4
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 3.5e-266 921.4 618 78.6
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 2.1e-263 912.1 594 80.6
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.4e-262 909.4 598 79.9
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 3.5e-258 894.8 591 80.0
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.9e-256 889.0 597 78.2
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 2.5e-256 888.6 600 77.5
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.0e-252 876.7 575 78.4
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 1.1e-251 873.2 595 76.5
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.9e-251 872.5 598 77.8
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 3.2e-251 871.7 575 78.6
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.7e-250 868.6 597 76.2
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 1.0e-249 866.7 596 76.2
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.4e-249 866.3 596 76.3
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.8e-249 865.9 591 76.8
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.8e-249 865.9 596 76.0
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.3e-249 865.5 591 76.6
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 3.0e-249 865.1 597 76.0
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.9e-249 864.8 590 76.4
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 6.7e-249 864.0 596 75.7
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 6.7e-249 864.0 591 76.5
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 4.3e-248 861.3 597 75.7
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.7e-248 860.9 591 76.3
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 9.7e-248 860.1 598 74.6
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 2.8e-247 858.6 591 75.0
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.4e-246 856.3 599 74.6
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.8e-246 855.9 591 75.5
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 3.1e-246 855.1 591 75.1
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 9.1e-246 853.6 596 75.3
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.2e-245 853.2 597 74.7
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 5.9e-245 850.9 595 74.3
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.3e-244 849.7 596 75.2
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.7e-244 849.4 597 75.2
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 2.2e-244 849.0 585 74.9
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 2.9e-244 848.6 597 74.7
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.9e-244 848.6 594 75.4
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 5.0e-244 847.8 592 74.2
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 8.5e-244 847.0 597 74.2
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.1e-243 846.7 591 73.8
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.4e-243 846.3 590 74.4
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 3.2e-243 845.1 598 73.6
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.4e-243 843.6 597 74.2
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 4.7e-242 841.3 593 76.2
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 1.0e-241 840.1 589 74.9
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.4e-241 839.7 591 73.9
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 5.1e-241 837.8 595 72.6
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 6.7e-241 837.4 591 73.3
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 6.7e-241 837.4 590 74.9
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.5e-240 836.3 590 74.7
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 2.0e-240 835.9 599 75.1
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 3.3e-240 835.1 589 74.7
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.3e-239 833.2 597 75.0
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.3e-239 833.2 595 73.9
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.3e-239 833.2 595 72.1
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 2.2e-239 832.4 593 74.4
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 2.2e-239 832.4 590 75.1
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 3.7e-239 831.6 597 73.5
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.7e-239 831.6 597 73.2
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 4.8e-239 831.2 596 74.3
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 4.8e-239 831.2 595 71.9
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.3e-239 830.9 597 73.2
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 8.2e-239 830.5 595 72.1
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.1e-238 830.1 595 74.1
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 1.1e-238 830.1 591 73.3
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.4e-238 829.7 593 73.9
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 9.1e-238 827.0 596 73.7
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.2e-237 826.6 588 73.1
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.2e-237 826.6 588 72.4
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.6e-237 825.5 588 72.8
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 3.5e-237 825.1 588 72.6
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 3.5e-237 825.1 511 82.6
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 4.5e-237 824.7 588 73.0
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 4.5e-237 824.7 564 76.4
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.0e-236 823.5 508 81.3
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.3e-236 823.2 589 72.5
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.3e-236 823.2 562 76.3
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.3e-236 823.2 588 73.0
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.7e-236 822.8 594 72.4
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.7e-236 822.8 595 72.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 2.2e-236 822.4 589 72.5
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 2.2e-236 822.4 588 72.8
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 2.9e-236 822.0 590 72.4
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.9e-236 822.0 625 70.4
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 3.8e-236 821.6 599 73.0
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 5.0e-236 821.2 594 73.2
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 6.5e-236 820.8 589 72.2
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.9e-235 819.3 588 72.6
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.5e-235 818.9 593 72.3
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 2.5e-235 818.9 594 73.2
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 3.2e-235 818.5 591 72.9
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 6.1e-234 814.3 567 76.0
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.0e-233 813.5 593 71.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 3.0e-233 812.0 589 72.0
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.5e-232 809.7 593 71.3
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 2.6e-232 808.9 589 71.8
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 4.4e-232 808.1 589 71.8
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 2.2e-231 805.8 695 63.3
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.8e-231 805.4 590 70.5
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 7.0e-230 800.8 588 72.3
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.6e-229 798.9 572 72.9
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 7.7e-229 797.3 585 72.6
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.5e-227 793.1 590 70.0
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.5e-227 793.1 592 70.4
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.9e-227 792.7 588 71.3
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.9e-227 792.7 692 63.4
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.7e-226 788.9 590 70.0
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 5.2e-225 784.6 590 71.0
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.5e-224 783.1 591 69.2
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 6.3e-223 777.7 590 70.7
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 9.1e-222 773.9 592 70.1
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.0e-220 770.4 590 70.3
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 5.5e-219 764.6 571 70.6
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.2e-213 746.9 591 67.7
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 7.7e-213 744.2 600 67.3
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 5.5e-211 738.0 584 67.5
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 5.4e-206 721.5 590 64.7
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 3.5e-205 718.8 583 65.7
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 3.3e-203 712.2 511 73.0
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 9.2e-198 694.1 589 64.3
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 3.7e-191 672.2 589 63.2
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 6.6e-188 661.4 433 80.4
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 2.1e-178 629.8 507 69.0
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.8e-178 629.4 478 68.6
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.1e-177 627.5 451 73.2
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 3.6e-162 575.9 524 61.5
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 9.6e-155 551.2 375 76.0
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 8.7e-148 528.1 372 73.1
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.8e-146 523.1 326 83.1
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 2.5e-142 510.0 588 49.0
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 8.7e-140 501.5 579 54.4
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.5e-134 482.3 400 66.8
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 4.5e-120 436.0 314 73.2
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 8.2e-114 415.2 252 83.3
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.2e-109 401.4 509 46.8
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 9.8e-99 365.2 554 41.7
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.4e-91 339.7 228 79.4
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 4.4e-91 339.7 229 74.7
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 7.8e-80 302.4 202 76.7
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 3.0e-71 273.9 210 67.1
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 3.0e-63 247.3 263 50.6
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 1.2e-59 235.3 322 41.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 2.4e-49 201.1 114 84.2
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 7.4e-46 189.5 266 43.6
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 6.7e-39 166.4 130 64.6
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.8e-31 141.7 137 59.1
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.5e-25 120.2 215 40.0
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 2.8e-21 107.8 104 53.8
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.5e-19 102.1 102 53.9
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 3.4e-19 100.9 80 62.5
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.7e-18 98.6 50 90.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 4.2e-17 94.0 52 86.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 4.2e-17 94.0 52 86.5
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 6.7e-15 86.7 102 52.9
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 5.7e-14 83.6 65 67.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.2e-10 71.6 60 63.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 1.2e-08 65.9 57 54.4
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.1e-08 65.1 73 49.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.1e-08 65.1 73 49.3
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.4e-07 62.4 63 54.0
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.4e-07 62.4 63 54.0
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 3.9e-07 60.8 57 45.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 8.8e-07 59.7 240 26.7
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 1.5e-06 58.9 63 50.8
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 5.7e-06 57.0 77 46.8
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 9.7e-06 56.2 75 46.7


User provided reference genes

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