Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.7e-154 549.3 273 100.0
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 4.8e-133 478.0 245 96.7
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 1.5e-102 376.7 270 69.3
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 2.4e-100 369.4 272 67.3
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 5.0e-98 361.7 273 65.9
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 1.6e-75 287.0 226 61.5
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 5.9e-75 285.0 266 54.5
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 1.0e-74 284.3 223 63.2
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.5e-73 279.6 252 53.2
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 7.3e-73 278.1 252 51.6
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.6e-72 276.9 257 50.6
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 6.1e-72 275.0 251 54.6
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 2.3e-71 273.1 251 54.2
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 8.9e-71 271.2 252 54.8
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 4.4e-70 268.9 252 55.2
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 9.8e-70 267.7 230 54.8
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.2e-69 266.5 249 51.4
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 1.4e-68 263.8 234 54.7
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.9e-68 263.5 246 50.4
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 2.4e-68 263.1 252 54.0
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 3.2e-68 262.7 231 51.5
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 3.2e-68 262.7 256 50.8
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 3.2e-68 262.7 256 51.2
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.6e-67 260.4 256 50.4
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 6.0e-67 258.5 234 55.6
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.3e-66 257.3 235 52.3
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 1.7e-66 256.9 256 50.4
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.1e-65 254.2 236 55.1
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.1e-65 254.2 230 51.3
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.5e-65 253.8 258 50.4
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 2.5e-65 253.1 236 50.4
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 3.3e-65 252.7 242 51.2
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 4.3e-65 252.3 242 52.1
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 5.6e-65 251.9 241 51.5
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 7.3e-65 251.5 256 48.0
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 9.5e-65 251.1 286 45.8
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.2e-64 250.8 240 51.2
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 2.8e-64 249.6 233 51.5
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 8.0e-64 248.1 233 51.9
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.8e-63 246.9 234 51.7
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 2.3e-63 246.5 254 50.0
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 5.2e-63 245.4 233 50.6
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.2e-62 244.2 255 49.4
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.2e-62 244.2 230 50.4
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.5e-62 243.8 241 49.0
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.5e-62 243.8 235 55.7
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.5e-62 243.8 240 48.3
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.0e-62 243.4 233 50.6
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.0e-62 243.4 231 49.8
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 3.4e-62 242.7 242 48.8
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 5.8e-62 241.9 232 52.2
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.8e-62 241.9 230 50.9
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 5.8e-62 241.9 240 50.0
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.2e-61 240.0 241 49.4
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 2.9e-61 239.6 256 53.1
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 1.4e-60 237.3 228 50.4
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.4e-60 237.3 229 49.8
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 1.4e-60 237.3 235 51.9
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 1.4e-60 237.3 215 54.0
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.9e-60 236.9 242 49.6
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.4e-60 236.5 228 50.0
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.2e-60 236.1 240 50.0
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 3.2e-60 236.1 240 50.0
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 4.1e-60 235.7 241 50.2
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.2e-59 234.2 242 49.2
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.6e-59 233.8 244 47.1
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.7e-59 233.0 228 49.1
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.5e-59 232.6 235 49.4
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 7.8e-59 231.5 233 48.1
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 3.0e-58 229.6 259 43.6
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 1.1e-57 227.6 242 47.9
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 1.1e-57 227.6 237 48.9
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.5e-57 227.3 241 48.5
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.5e-57 227.3 241 49.0
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.5e-57 227.3 255 46.7
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.9e-57 226.9 237 49.4
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 3.3e-57 226.1 256 46.1
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 3.3e-57 226.1 241 48.1
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 4.3e-57 225.7 254 46.5
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.2e-56 224.2 224 50.9
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 2.8e-56 223.0 239 46.4
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 4.7e-56 222.2 239 47.7
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 8.1e-56 221.5 247 42.1
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 8.1e-56 221.5 228 47.4
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 8.1e-56 221.5 239 47.7
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 1.8e-55 220.3 237 47.7
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 6.8e-55 218.4 238 49.2
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 8.9e-55 218.0 215 49.3
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.2e-54 217.6 242 46.7
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 4.4e-54 215.7 241 45.2
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 4.4e-54 215.7 241 48.1
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 9.9e-54 214.5 244 44.7
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 9.9e-54 214.5 237 45.1
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 9.9e-54 214.5 161 65.2
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.7e-53 213.8 240 44.6
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 3.7e-53 212.6 189 54.5
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 3.7e-53 212.6 242 44.6
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 3.7e-53 212.6 214 50.5
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 6.4e-53 211.8 241 44.4
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 1.1e-52 211.1 256 43.8
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.4e-52 210.7 238 46.6
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 1.9e-52 210.3 241 46.5
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.9e-52 210.3 186 53.8
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.9e-52 210.3 186 53.8
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 2.4e-52 209.9 242 45.9
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 3.2e-52 209.5 256 43.8
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 3.2e-52 209.5 249 44.6
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 7.1e-52 208.4 244 45.1
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.6e-51 207.2 241 45.6
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 2.7e-51 206.5 243 44.4
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 3.5e-51 206.1 241 42.7
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 4.6e-51 205.7 229 45.4
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 4.6e-51 205.7 241 44.4
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 6.0e-51 205.3 239 46.4
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 2.3e-50 203.4 238 42.9
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 3.9e-50 202.6 256 42.6
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 3.9e-50 202.6 242 45.0
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 3.9e-50 202.6 242 45.0
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 6.6e-50 201.8 255 42.4
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.2e-48 197.6 210 47.1
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 8.1e-48 194.9 239 43.9
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.1e-47 194.5 237 44.3
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.2e-46 191.0 243 44.0
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 1.2e-46 191.0 243 44.0
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.4e-46 189.5 240 43.3
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 9.3e-44 181.4 208 42.8
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 9.3e-44 181.4 181 50.3
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.6e-43 180.6 194 45.4
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 5.1e-42 175.6 235 40.0
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.1e-42 175.6 200 44.5
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 1.5e-41 174.1 163 51.5
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 5.6e-41 172.2 207 45.4
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 2.1e-40 170.2 203 42.9
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.3e-37 161.0 243 36.2
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 9.3e-36 154.8 235 38.7
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 3.9e-34 149.4 214 38.3
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 1.4e-31 141.0 200 42.0
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 6.9e-31 138.7 98 63.3
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 3.9e-26 122.9 189 38.6
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 6.7e-26 122.1 88 63.6
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.6e-24 117.5 144 45.1
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.7e-24 116.3 93 53.8
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.4e-22 109.8 95 51.6
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.7e-21 107.5 247 30.8
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 2.5e-20 103.6 143 40.6
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 6.0e-19 99.0 86 55.8
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 1.9e-17 94.0 134 36.6
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 7.4e-17 92.0 72 52.8
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 7.4e-17 92.0 304 28.0
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.3e-16 91.3 86 47.7
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 8.2e-08 62.0 45 60.0
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 2.6e-06 57.0 44 54.5


User provided reference genes

Program Settings