Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.6e-92 342.8 183 100.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.1e-43 179.1 108 97.2
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.1e-35 152.5 89 98.9
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.1e-35 152.5 89 98.9
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 3.9e-30 135.6 108 75.9
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.3e-25 120.6 100 80.0
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 6.0e-23 111.7 108 63.0
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.3e-22 109.8 108 67.6
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 5.1e-22 108.6 108 63.0
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 1.1e-21 107.5 109 63.3
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 3.3e-21 105.9 108 63.9
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 5.6e-21 105.1 108 63.0
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.8e-20 102.8 112 58.9
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 2.8e-20 102.8 115 60.9
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 3.7e-20 102.4 108 62.0
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 3.7e-20 102.4 108 61.1
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 3.7e-20 102.4 108 62.0
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 4.8e-20 102.1 110 61.8
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 4.8e-20 102.1 109 61.5
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 6.2e-20 101.7 115 60.9
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.1e-19 100.9 111 61.3
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.1e-19 100.9 111 61.3
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.4e-19 100.5 108 59.3
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 1.4e-19 100.5 110 60.0
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 2.4e-19 99.8 108 62.0
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 2.4e-19 99.8 109 62.4
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 2.4e-19 99.8 108 63.0
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 3.1e-19 99.4 108 63.9
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 3.1e-19 99.4 108 63.9
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 4.0e-19 99.0 111 61.3
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 4.0e-19 99.0 115 59.1
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 4.0e-19 99.0 115 59.1
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 1.5e-18 97.1 107 61.7
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 1.5e-18 97.1 107 61.7
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.6e-18 96.3 108 56.5
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 2.6e-18 96.3 108 63.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 2.2e-17 93.2 114 57.0
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 3.8e-17 92.4 105 64.8
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 4.9e-17 92.0 111 59.5
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 8.4e-17 91.3 98 59.2
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 2.5e-16 89.7 108 55.6
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 5.5e-16 88.6 103 61.2
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 9.3e-16 87.8 99 58.6
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 1.2e-15 87.4 111 58.6
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 1.6e-15 87.0 105 57.1
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 1.6e-15 87.0 98 60.2
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.1e-15 86.7 101 55.4
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 3.5e-15 85.9 108 53.7
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 4.6e-15 85.5 108 53.7
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 6.0e-15 85.1 108 54.6
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 7.9e-15 84.7 98 58.2
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 7.9e-15 84.7 100 57.0
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 7.9e-15 84.7 107 53.3
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.0e-14 84.3 101 60.4
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 1.3e-14 84.0 102 58.8
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.3e-14 83.2 108 50.9
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.0e-14 82.8 108 50.9
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.9e-14 82.4 108 50.9
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 5.1e-14 82.0 98 59.2
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 5.1e-14 82.0 98 61.2
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 6.7e-14 81.6 107 56.1
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 6.7e-14 81.6 98 56.1
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 6.7e-14 81.6 108 52.8
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 6.7e-14 81.6 108 53.7
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 6.7e-14 81.6 108 55.6
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 8.7e-14 81.3 102 56.9
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 1.5e-13 80.5 100 56.0
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 1.9e-13 80.1 95 56.8
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 3.3e-13 79.3 102 52.9
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 3.3e-13 79.3 98 54.1
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 3.3e-13 79.3 100 54.0
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 3.3e-13 79.3 116 53.4
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 5.7e-13 78.6 119 52.1
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 7.4e-13 78.2 103 57.3
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.3e-12 77.4 96 55.2
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 1.3e-12 77.4 98 55.1
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 4.8e-12 75.5 109 54.1
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 6.3e-12 75.1 110 52.7
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 8.2e-12 74.7 109 53.2
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 8.2e-12 74.7 115 52.2
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 8.2e-12 74.7 101 56.4
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 1.4e-11 73.9 88 61.4
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 1.8e-11 73.6 98 53.1
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 2.4e-11 73.2 101 52.5
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 2.4e-11 73.2 100 53.0
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 5.3e-11 72.0 101 55.4
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 5.3e-11 72.0 100 51.0
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 5.3e-11 72.0 98 52.0
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 9.0e-11 71.2 98 53.1
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.2e-10 70.9 98 54.1
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 1.5e-10 70.5 98 51.0
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 2.6e-10 69.7 108 47.2
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 7.7e-10 68.2 114 48.2
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 1.0e-09 67.8 98 49.0
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.3e-09 67.4 108 46.3
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 2.9e-09 66.2 106 48.1
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 3.8e-09 65.9 100 50.0
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 5.0e-09 65.5 99 51.5
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 5.0e-09 65.5 100 51.0
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 8.5e-09 64.7 102 49.0
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 8.5e-09 64.7 101 48.5
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.1e-08 64.3 106 46.2
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.1e-08 64.3 106 46.2
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.1e-08 64.3 106 46.2
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.1e-08 64.3 108 47.2
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.1e-08 64.3 108 50.9
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 1.4e-08 63.9 101 50.5
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 2.5e-08 63.2 98 52.0
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 3.2e-08 62.8 106 46.2
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 3.2e-08 62.8 101 47.5
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 4.2e-08 62.4 106 48.1
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 4.2e-08 62.4 106 46.2
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 7.2e-08 61.6 106 48.1
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 7.2e-08 61.6 106 45.3
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 7.2e-08 61.6 90 50.0
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 9.4e-08 61.2 106 45.3
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 1.2e-07 60.8 110 43.6
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 1.6e-07 60.5 107 48.6
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 1.6e-07 60.5 106 45.3
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 2.1e-07 60.1 101 50.5
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 2.1e-07 60.1 100 45.0
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.1e-07 60.1 64 59.4
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 2.1e-07 60.1 90 48.9
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 2.1e-07 60.1 98 46.9
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 2.7e-07 59.7 106 43.4
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 2.7e-07 59.7 106 46.2
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 3.6e-07 59.3 99 47.5
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 4.6e-07 58.9 106 44.3
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 4.6e-07 58.9 106 44.3
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 4.6e-07 58.9 101 47.5
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 4.6e-07 58.9 106 44.3
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 6.1e-07 58.5 92 48.9
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 6.1e-07 58.5 98 46.9
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 6.1e-07 58.5 106 46.2
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 6.1e-07 58.5 106 48.1
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 7.9e-07 58.2 48 66.7
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 7.9e-07 58.2 101 47.5
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 7.9e-07 58.2 101 45.5
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.4e-06 57.4 106 43.4
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 1.4e-06 57.4 98 48.0
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.8e-06 57.0 106 43.4
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.8e-06 57.0 98 46.9
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.8e-06 57.0 106 41.5
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.3e-06 56.6 106 42.5
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 2.3e-06 56.6 107 46.7
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 2.3e-06 56.6 107 46.7
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 2.3e-06 56.6 107 46.7
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 2.3e-06 56.6 107 46.7
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 2.3e-06 56.6 107 46.7
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 2.3e-06 56.6 106 42.5
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 2.3e-06 56.6 106 45.3
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 2.3e-06 56.6 106 40.6
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 2.3e-06 56.6 111 40.5
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 2.3e-06 56.6 90 47.8
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 3.0e-06 56.2 54 68.5
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 3.0e-06 56.2 106 41.5
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 3.9e-06 55.8 173 36.4
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 3.9e-06 55.8 106 44.3
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 3.9e-06 55.8 106 41.5
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 5.1e-06 55.5 106 43.4
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 5.1e-06 55.5 45 66.7
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 5.1e-06 55.5 106 41.5
arahy.Tifrunner.gnm1.ann1.D6ADVN Arachis hypogaea HOM05D006762 ORTHO05D003505 6.7e-06 55.1 99 48.5
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 6.7e-06 55.1 109 42.2
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 6.7e-06 55.1 48 60.4
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 8.8e-06 54.7 107 40.2
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 8.8e-06 54.7 107 40.2


User provided reference genes

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