Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.0e-82 310.1 158 100.0
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 4.8e-61 238.0 158 75.9
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.4e-55 219.9 155 69.7
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.3e-54 215.3 157 70.1
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 9.7e-54 213.8 156 70.5
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.7e-53 213.0 155 69.0
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 2.8e-53 212.2 156 69.9
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.3e-53 211.1 158 67.7
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 8.2e-53 210.7 156 69.2
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.1e-52 210.3 157 67.5
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.4e-52 209.9 153 67.3
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.4e-52 209.9 157 68.2
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.8e-52 209.5 158 67.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.2e-51 206.8 156 63.5
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.7e-51 205.7 143 70.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.7e-51 205.7 155 65.2
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.5e-51 205.3 155 65.2
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.5e-51 205.3 144 71.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.5e-51 205.3 155 65.2
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 4.5e-51 204.9 159 66.0
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 5.9e-51 204.5 155 65.2
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 5.9e-51 204.5 155 65.2
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 7.7e-51 204.1 155 64.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 7.7e-51 204.1 157 65.0
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.0e-50 203.8 155 63.9
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.0e-50 203.8 157 67.5
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.3e-50 203.4 159 64.2
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.2e-50 202.6 158 64.6
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 3.8e-50 201.8 157 65.0
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.0e-50 201.4 156 64.7
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.0e-50 201.4 156 64.1
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 5.0e-50 201.4 143 69.2
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 8.5e-50 200.7 145 67.6
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.5e-49 199.9 155 63.2
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-49 199.9 164 62.2
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.5e-49 199.1 143 67.1
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 3.2e-49 198.7 143 67.1
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.2e-49 198.4 155 63.9
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 5.5e-49 198.0 156 66.7
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 5.5e-49 198.0 144 66.7
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.2e-49 197.6 157 63.7
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.2e-48 196.8 145 66.2
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 2.1e-48 196.1 156 64.7
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.1e-48 196.1 151 64.9
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.7e-48 195.7 156 64.7
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.7e-48 195.7 157 63.7
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.7e-48 195.7 148 64.9
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.7e-48 195.7 156 65.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 3.6e-48 195.3 156 64.7
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.6e-48 195.3 156 63.5
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.6e-48 195.3 143 66.4
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 4.7e-48 194.9 156 64.7
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 6.1e-48 194.5 158 63.3
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.1e-48 194.5 153 63.4
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 6.1e-48 194.5 153 63.4
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 8.0e-48 194.1 156 64.1
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 8.0e-48 194.1 158 63.3
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 8.0e-48 194.1 157 63.1
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.0e-47 193.7 145 67.6
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.8e-47 193.0 146 65.8
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.8e-47 193.0 156 64.7
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.3e-47 192.6 145 65.5
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.0e-47 191.8 143 64.3
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 5.2e-47 191.4 156 63.5
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 5.2e-47 191.4 141 66.7
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.2e-46 190.3 158 61.4
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.5e-46 189.9 158 62.7
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 2.0e-46 189.5 156 62.2
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.0e-46 189.5 142 66.2
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 5.7e-46 188.0 156 62.2
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 5.7e-46 188.0 155 61.9
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 5.7e-46 188.0 155 60.6
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 5.7e-46 188.0 155 61.9
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 9.8e-46 187.2 143 65.0
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 9.8e-46 187.2 143 65.7
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 9.8e-46 187.2 143 65.7
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 9.8e-46 187.2 133 71.4
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 9.8e-46 187.2 141 68.1
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.3e-45 186.8 143 64.3
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.8e-45 185.7 133 66.9
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.7e-45 185.3 156 61.5
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.4e-44 183.3 132 68.2
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.8e-44 183.0 155 60.6
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.8e-44 183.0 149 63.1
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.4e-44 182.6 156 59.6
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 2.4e-44 182.6 156 59.6
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.4e-44 182.6 143 63.6
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 3.1e-44 182.2 143 62.9
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 3.1e-44 182.2 136 65.4
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 7.0e-44 181.0 154 61.7
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.6e-43 179.9 143 62.9
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.7e-43 179.1 132 67.4
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.5e-43 178.3 143 62.9
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.3e-42 176.8 142 61.3
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.7e-42 176.4 136 64.0
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.7e-42 176.4 142 59.9
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.9e-42 175.6 141 63.1
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.8e-42 175.3 143 60.8
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 6.5e-42 174.5 143 62.2
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.1e-41 173.7 156 59.0
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-41 173.3 139 61.9
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.9e-41 172.9 139 61.9
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.9e-41 172.9 142 62.0
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.9e-41 172.9 133 64.7
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.9e-41 172.9 142 62.7
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.5e-41 172.6 133 63.9
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.5e-41 172.6 133 63.9
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.5e-41 172.6 133 63.9
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 2.5e-41 172.6 142 59.2
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.2e-41 171.8 141 61.0
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 4.2e-41 171.8 153 58.2
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.1e-40 169.5 142 58.5
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.7e-40 169.1 131 65.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.6e-40 168.7 143 58.0
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.7e-40 168.3 131 61.8
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.7e-40 168.3 131 61.8
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 4.7e-40 168.3 135 61.5
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.1e-40 167.9 140 58.6
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.3e-39 166.0 142 57.7
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 3.0e-39 165.6 142 59.2
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 5.2e-39 164.9 141 59.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 6.8e-39 164.5 135 59.3
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-38 163.7 139 58.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.5e-38 163.3 133 61.7
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.0e-38 162.9 136 61.0
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 2.6e-38 162.5 142 54.2
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.4e-38 162.2 132 60.6
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.4e-38 162.2 135 60.0
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.4e-38 161.8 139 59.0
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 9.8e-38 160.6 136 60.3
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.8e-38 160.6 136 60.3
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 9.8e-38 160.6 144 56.9
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.7e-37 159.8 144 56.9
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.8e-37 159.1 141 58.2
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.8e-37 159.1 89 79.8
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.7e-37 158.7 139 58.3
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 5.4e-36 154.8 142 55.6
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.2e-35 153.7 144 55.6
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.6e-35 153.3 138 55.1
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 3.5e-35 152.1 125 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.3e-34 150.2 129 56.6
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 2.3e-34 149.4 142 54.9
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 2.9e-34 149.1 131 58.0
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 6.6e-34 147.9 92 75.0
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 6.6e-34 147.9 131 58.8
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.5e-33 146.7 131 55.7
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.5e-33 146.7 154 53.2
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 2.5e-33 146.0 135 52.6
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 5.6e-33 144.8 96 67.7
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.3e-33 144.4 132 56.1
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.2e-32 143.7 130 57.7
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.1e-32 142.9 131 55.0
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 3.6e-32 142.1 131 51.9
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.0e-31 140.6 149 51.0
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.0e-31 140.6 89 73.0
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.8e-30 134.0 130 52.3
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.3e-29 133.7 130 49.2
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.1e-28 128.6 111 57.7
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.6e-27 126.7 157 47.8
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.6e-27 126.7 136 50.7
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.5e-25 119.4 157 45.9
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 7.0e-20 101.3 132 47.7
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.6e-19 100.1 139 43.2
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.0e-19 99.8 87 55.2
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-18 97.1 139 41.7
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.7e-18 96.7 139 41.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.9e-17 93.2 126 42.1
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.5e-17 92.8 79 57.0
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 3.1e-15 85.9 81 54.3
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.9e-15 84.3 82 59.8
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-13 80.1 52 65.4
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.1e-12 77.4 50 66.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.2e-11 73.9 48 72.9
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 6.0e-11 71.6 49 61.2
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 6.6e-10 68.2 91 46.2
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 6.6e-10 68.2 120 36.7
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 2.6e-06 56.2 102 37.3
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 3.4e-06 55.8 78 34.6


User provided reference genes

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