Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 6.4e-88 327.4 167 100.0
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 5.1e-61 238.0 170 71.8
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 4.5e-57 224.9 171 68.4
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 2.3e-53 212.6 168 68.5
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 1.3e-51 206.8 177 62.7
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.4e-50 203.4 149 69.1
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 2.2e-48 196.1 167 62.3
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 1.0e-45 187.2 177 59.3
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 3.8e-40 168.7 175 55.4
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 7.4e-36 154.5 183 51.4
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.4e-34 149.4 166 53.6
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 3.1e-34 149.1 167 53.3
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 1.3e-32 143.7 171 52.6
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 3.8e-32 142.1 173 52.6
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 8.5e-32 141.0 171 52.0
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 1.1e-31 140.6 167 49.7
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 3.9e-29 132.1 102 67.6
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 4.4e-28 128.6 95 69.5
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 2.2e-27 126.3 92 70.7
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 2.8e-27 125.9 95 68.4
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 3.7e-27 125.6 105 62.9
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.7e-27 125.6 95 69.5
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 4.8e-27 125.2 82 78.0
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 6.3e-27 124.8 102 64.7
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 8.2e-27 124.4 103 63.1
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 8.2e-27 124.4 176 47.7
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 1.1e-26 124.0 87 72.4
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.1e-26 124.0 116 56.9
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 1.1e-26 124.0 82 75.6
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.8e-26 123.2 91 68.1
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 3.1e-26 122.5 119 57.1
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 3.1e-26 122.5 108 63.0
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 4.1e-26 122.1 165 46.1
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 4.1e-26 122.1 109 59.6
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 6.9e-26 121.3 168 45.8
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 6.9e-26 121.3 168 45.8
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 6.9e-26 121.3 80 71.2
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 9.1e-26 120.9 105 61.0
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 9.1e-26 120.9 98 66.3
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 1.2e-25 120.6 89 70.8
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 1.2e-25 120.6 88 67.0
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 2.6e-25 119.4 172 44.8
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 2.6e-25 119.4 85 71.8
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 2.6e-25 119.4 128 52.3
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 3.4e-25 119.0 108 54.6
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 5.9e-25 118.2 81 72.8
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 7.7e-25 117.9 92 65.2
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 7.7e-25 117.9 89 66.3
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 7.7e-25 117.9 84 67.9
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 7.7e-25 117.9 84 67.9
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 7.7e-25 117.9 107 58.9
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 7.7e-25 117.9 93 64.5
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 1.0e-24 117.5 93 64.5
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 1.0e-24 117.5 90 62.2
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 1.7e-24 116.7 103 57.3
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 1.7e-24 116.7 101 60.4
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.9e-24 115.9 80 72.5
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 2.9e-24 115.9 82 72.0
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 2.9e-24 115.9 111 56.8
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 2.9e-24 115.9 90 62.2
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 2.9e-24 115.9 112 58.0
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.8e-24 115.5 84 66.7
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 3.8e-24 115.5 84 66.7
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 3.8e-24 115.5 104 59.6
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 5.0e-24 115.2 103 56.3
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 5.0e-24 115.2 91 65.9
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 5.0e-24 115.2 86 66.3
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 5.0e-24 115.2 152 46.1
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 6.5e-24 114.8 82 70.7
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 6.5e-24 114.8 107 55.1
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 6.5e-24 114.8 113 52.2
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 6.5e-24 114.8 82 70.7
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 1.4e-23 113.6 130 52.3
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.4e-23 113.6 80 72.5
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 1.4e-23 113.6 83 61.4
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 1.4e-23 113.6 76 75.0
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.4e-23 113.6 89 66.3
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 1.9e-23 113.2 97 59.8
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.9e-23 113.2 97 60.8
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.9e-23 113.2 97 60.8
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 1.9e-23 113.2 111 55.9
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.9e-23 113.2 90 63.3
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 2.5e-23 112.8 97 60.8
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 2.5e-23 112.8 103 56.3
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 2.5e-23 112.8 97 59.8
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 2.5e-23 112.8 115 55.7
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 3.2e-23 112.5 93 62.4
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 4.2e-23 112.1 158 43.7
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 5.5e-23 111.7 90 63.3
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 7.2e-23 111.3 81 69.1
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 7.2e-23 111.3 95 61.1
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 9.4e-23 110.9 81 70.4
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 1.6e-22 110.2 117 55.6
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.1e-22 109.8 81 69.1
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.1e-22 109.8 80 68.8
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 2.7e-22 109.4 108 55.6
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 8.0e-22 107.8 107 58.9
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 8.0e-22 107.8 131 45.8
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.8e-21 106.7 111 53.2
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 1.8e-21 106.7 93 63.4
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 3.0e-21 105.9 81 64.2
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 3.9e-21 105.5 81 64.2
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 3.9e-21 105.5 81 64.2
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 3.9e-21 105.5 115 50.4
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 3.9e-21 105.5 80 67.5
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 5.2e-21 105.1 81 64.2
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 5.2e-21 105.1 105 54.3
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 5.2e-21 105.1 168 41.1
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 1.1e-20 104.0 83 60.2
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.1e-20 104.0 109 53.2
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.5e-20 103.6 78 67.9
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 2.0e-20 103.2 115 49.6
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 4.4e-20 102.1 96 55.2
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.4e-20 101.3 73 69.9
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 7.4e-20 101.3 96 56.2
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 9.7e-20 100.9 107 52.3
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 9.7e-20 100.9 83 66.3
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.7e-19 100.1 99 53.5
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.2e-19 99.8 89 55.1
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 2.2e-19 99.8 81 60.5
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.8e-19 99.4 71 70.4
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 2.8e-19 99.4 71 70.4
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 2.8e-19 99.4 104 50.0
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 3.7e-19 99.0 112 54.5
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 5.3e-18 95.1 81 58.0
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 1.2e-17 94.0 83 61.4
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.0e-17 93.2 74 64.9
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 2.6e-17 92.8 83 60.2
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 4.5e-17 92.0 91 52.7
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.7e-16 90.1 80 56.2
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 2.9e-16 89.4 80 56.2
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 6.5e-16 88.2 76 53.9
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 3.2e-15 85.9 116 47.4
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.2e-15 85.5 95 51.6
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 1.2e-14 84.0 90 51.1
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.1e-14 83.2 95 49.5
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 1.0e-13 80.9 81 55.6
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 1.0e-13 80.9 81 55.6
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 4.0e-13 79.0 64 57.8
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 8.8e-13 77.8 75 54.7
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 9.7e-12 74.3 95 44.2
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 9.7e-12 74.3 95 44.2
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 5.3e-10 68.6 80 48.8
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 2.2e-08 63.2 70 48.6
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 4.2e-07 58.9 76 46.1


User provided reference genes

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