Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.5e-234 813.9 406 100.0
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 5.5e-234 813.9 406 100.0
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 2.8e-161 572.4 383 75.5
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 3.5e-156 555.4 375 74.4
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 1.7e-155 553.1 375 73.6
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 3.9e-155 552.0 375 73.6
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 6.6e-155 551.2 332 81.6
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 1.6e-148 530.0 361 74.2
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 7.8e-148 527.7 348 76.1
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 3.0e-147 525.8 370 73.2
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 3.0e-147 525.8 396 69.9
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 5.1e-147 525.0 342 78.1
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 1.5e-146 523.5 392 70.2
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 3.3e-146 522.3 352 74.4
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 9.6e-146 520.8 375 72.5
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 1.2e-145 520.4 335 78.2
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 3.6e-145 518.8 354 74.3
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 6.2e-145 518.1 360 73.3
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 8.1e-145 517.7 362 73.5
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 8.1e-145 517.7 360 72.5
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.1e-144 517.3 354 74.0
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 2.4e-144 516.2 348 75.3
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.0e-144 515.4 335 76.4
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 6.9e-144 514.6 348 73.9
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 6.9e-144 514.6 410 66.8
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 2.6e-143 512.7 381 69.6
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 4.4e-143 511.9 331 78.2
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 4.4e-143 511.9 366 71.9
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 5.8e-143 511.5 339 75.2
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 7.6e-143 511.1 362 72.1
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 7.6e-143 511.1 349 73.6
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 2.2e-142 509.6 392 67.9
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.2e-142 509.6 364 71.4
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.9e-142 509.2 375 69.3
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 4.9e-142 508.4 382 69.6
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 4.9e-142 508.4 334 76.3
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 6.4e-142 508.1 292 83.9
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 6.4e-142 508.1 341 75.1
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.4e-142 508.1 346 73.1
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 8.4e-142 507.7 329 76.3
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.1e-141 507.3 365 69.6
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 1.1e-141 507.3 335 74.6
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.9e-141 506.5 375 68.8
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 2.4e-141 506.1 388 68.6
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.2e-141 505.4 356 73.0
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 5.4e-141 505.0 335 75.5
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 7.1e-141 504.6 354 72.6
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 1.2e-140 503.8 371 70.1
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 2.7e-140 502.7 334 73.4
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 2.7e-140 502.7 334 74.0
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 2.7e-140 502.7 331 76.1
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 3.5e-140 502.3 342 74.0
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 7.8e-140 501.1 334 73.4
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.0e-139 500.7 359 72.4
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.0e-139 500.7 332 74.7
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 2.3e-139 499.6 360 72.2
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 3.9e-139 498.8 336 73.8
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 1.6e-137 493.4 339 71.1
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 2.8e-137 492.7 331 73.1
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 7.6e-135 484.6 330 73.9
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 4.9e-134 481.9 391 66.5
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 4.2e-133 478.8 353 70.3
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 6.7e-131 471.5 331 69.2
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 6.7e-131 471.5 331 69.2
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 2.5e-130 469.5 343 67.6
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 2.5e-130 469.5 340 67.9
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 5.6e-130 468.4 514 54.7
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.6e-129 466.8 399 61.4
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 2.8e-129 466.1 336 67.3
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 2.8e-129 466.1 402 63.4
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 3.7e-129 465.7 332 70.2
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 3.7e-129 465.7 337 67.4
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 3.7e-129 465.7 331 71.0
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 3.7e-129 465.7 328 70.4
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 6.2e-129 464.9 334 69.5
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 1.1e-128 464.2 345 67.0
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.1e-128 464.2 361 65.1
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 3.1e-128 462.6 397 60.7
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 9.0e-128 461.1 390 61.3
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 3.4e-127 459.1 331 71.6
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 3.4e-127 459.1 525 51.6
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 4.5e-127 458.8 330 67.9
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 5.8e-127 458.4 345 66.1
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 6.4e-126 454.9 342 67.5
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.4e-125 453.8 396 59.6
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.4e-125 453.8 396 59.3
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 1.2e-124 450.7 359 63.2
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 4.6e-124 448.7 333 65.8
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 1.5e-122 443.7 335 66.0
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 1.9e-122 443.4 341 65.7
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 4.3e-122 442.2 335 65.7
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 2.1e-121 439.9 335 65.1
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 2.1e-121 439.9 335 65.1
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 4.8e-121 438.7 281 75.4
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 4.0e-120 435.6 335 63.9
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 1.2e-119 434.1 357 61.1
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 1.6e-116 423.7 339 64.3
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 6.0e-116 421.8 384 60.9
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 7.4e-114 414.8 326 68.7
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 1.3e-113 414.1 318 65.7
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.4e-112 410.6 375 60.5
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.8e-112 410.2 384 56.0
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.3e-107 393.3 293 68.6
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 1.5e-106 390.6 215 86.5
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 3.3e-106 389.4 219 86.8
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 5.7e-106 388.7 302 64.6
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 9.7e-106 387.9 275 67.3
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 4.5e-103 379.0 270 67.4
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 7.7e-103 378.3 237 78.1
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 3.2e-101 372.9 551 43.7
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 1.5e-98 364.0 287 65.9
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 1.2e-95 354.4 258 66.3
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 9.4e-93 344.7 196 83.2
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 1.6e-92 344.0 263 64.6
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 5.7e-90 335.5 233 73.8
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 7.0e-88 328.6 230 74.8
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.7e-84 316.6 328 55.2
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 4.7e-84 315.8 214 72.9
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 1.4e-83 314.3 232 70.3
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 4.1e-80 302.8 217 67.3
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.0e-80 302.0 269 55.8
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 3.4e-74 283.1 245 58.0
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 2.6e-66 256.9 237 61.6
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 5.8e-42 176.0 252 41.7
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.4e-40 171.4 259 36.7
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 8.9e-35 152.1 201 50.2
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 5.4e-32 142.9 286 34.6
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 8.1e-28 129.0 121 58.7
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 8.4e-25 119.0 252 34.9
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 4.6e-23 113.2 88 67.0
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 9.6e-21 105.5 118 52.5
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 1.6e-20 104.8 133 50.4
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 6.9e-19 99.4 136 43.4
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.0e-18 97.8 64 70.3
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.7e-17 94.7 64 68.8
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.7e-17 94.7 64 68.8
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.4e-17 92.8 64 65.6
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.4e-17 92.8 64 65.6
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.4e-17 92.8 64 65.6
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 1.9e-16 91.3 64 64.1
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.4e-16 90.9 64 64.1
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 6.7e-14 82.8 49 85.7
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.1e-13 82.0 166 32.5
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 1.5e-13 81.6 192 31.2
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 4.3e-13 80.1 171 33.3
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 1.6e-12 78.2 156 35.9
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 5.8e-10 69.7 195 32.8


User provided reference genes

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