Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 8.0e-152 540.4 280 100.0
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.7e-80 303.5 286 57.3
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.1e-79 300.8 290 57.2
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 8.5e-77 291.2 286 57.0
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 5.7e-73 278.5 289 52.9
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 4.8e-72 275.4 286 53.8
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 8.2e-72 274.6 289 52.6
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 5.3e-71 271.9 289 51.6
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 7.7e-70 268.1 286 51.4
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 5.0e-69 265.4 263 53.2
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 8.5e-69 264.6 286 49.7
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 3.2e-68 262.7 265 53.6
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 7.2e-68 261.5 286 51.7
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.6e-67 260.4 280 50.7
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.1e-67 260.0 263 52.9
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 2.7e-67 259.6 255 54.9
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 3.6e-67 259.2 264 53.4
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 6.1e-67 258.5 237 57.0
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 8.0e-67 258.1 249 59.4
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.4e-66 257.3 237 57.0
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 5.2e-66 255.4 276 51.8
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 5.2e-66 255.4 284 50.4
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 6.8e-66 255.0 275 50.5
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 6.8e-66 255.0 257 53.7
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 2.6e-65 253.1 252 53.2
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 4.4e-65 252.3 222 59.5
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 5.7e-65 251.9 277 50.9
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.7e-65 251.9 265 51.7
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.7e-64 250.4 288 50.0
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.8e-64 249.6 263 51.0
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 3.7e-64 249.2 263 52.1
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 3.7e-64 249.2 286 49.7
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 4.8e-64 248.8 292 49.3
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 1.1e-63 247.7 249 53.0
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.1e-63 247.7 221 57.9
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.1e-63 247.7 257 52.1
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.4e-63 247.3 268 51.9
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.4e-63 247.3 262 52.3
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 3.1e-63 246.1 268 53.0
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 5.4e-63 245.4 250 56.4
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 7.0e-63 245.0 251 53.0
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 9.1e-63 244.6 249 53.4
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.2e-62 244.2 266 50.0
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.6e-62 243.8 249 54.2
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.0e-62 243.4 289 48.4
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.7e-62 243.0 257 51.8
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 2.7e-62 243.0 245 54.3
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 5.9e-62 241.9 264 51.5
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 5.9e-62 241.9 262 50.8
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.3e-61 240.7 249 53.8
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.1e-60 237.7 257 51.4
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 4.2e-60 235.7 286 49.0
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 7.2e-60 235.0 263 49.4
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 9.4e-60 234.6 248 51.2
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-59 234.2 286 48.6
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 2.7e-59 233.0 246 50.8
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 2.7e-59 233.0 222 56.3
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 3.6e-59 232.6 220 55.0
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 6.1e-59 231.9 251 52.2
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 2.3e-58 229.9 251 51.4
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.3e-58 229.9 250 51.6
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 3.0e-58 229.6 282 46.5
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 3.0e-58 229.6 248 50.0
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 4.0e-58 229.2 213 56.3
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 4.0e-58 229.2 220 55.5
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 4.0e-58 229.2 250 49.6
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 6.8e-58 228.4 287 44.6
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 8.8e-58 228.0 255 47.1
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 8.8e-58 228.0 220 53.6
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-57 227.3 224 55.4
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 2.0e-57 226.9 257 47.5
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.4e-57 225.7 222 52.3
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 5.7e-57 225.3 212 55.7
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 7.5e-57 224.9 257 47.5
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 7.5e-57 224.9 272 46.0
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 1.7e-56 223.8 257 47.1
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.7e-56 223.8 285 43.5
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 2.8e-56 223.0 257 48.2
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 6.3e-56 221.9 257 47.1
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 8.3e-56 221.5 230 50.0
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.4e-55 220.7 287 45.6
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.4e-55 219.9 259 47.5
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.4e-55 219.9 259 47.5
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 4.1e-55 219.2 257 47.5
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 5.4e-55 218.8 257 46.7
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 5.4e-55 218.8 257 48.2
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 7.7e-54 214.9 254 49.6
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 1.6e-51 207.2 202 56.4
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 6.1e-51 205.3 267 46.1
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.0e-50 204.5 224 48.7
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.6e-49 199.9 221 49.3
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 1.7e-48 197.2 283 42.0
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-46 190.7 203 52.2
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 7.8e-46 188.3 277 40.4
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.0e-45 188.0 211 50.2
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-45 186.4 198 53.0
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 4.7e-43 179.1 220 47.7
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.0e-42 177.9 218 47.2
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.3e-42 176.8 185 51.9
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 2.2e-40 170.2 121 66.9
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 3.7e-40 169.5 216 44.9
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 8.3e-40 168.3 122 66.4
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 2.4e-39 166.8 175 53.7
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-35 153.3 234 43.2
SalBow1G4086 Salvia bowleyana HOM05D005360 ORTHO05D006501 7.5e-33 145.2 91 82.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-31 141.0 248 39.5
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.4e-31 141.0 222 36.9
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.6e-22 110.9 80 65.0
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 1.7e-21 107.5 128 46.9
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.1e-21 105.9 74 66.2
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-19 100.9 189 36.0
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.8e-16 89.7 71 64.8
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.9e-15 87.4 142 39.4
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 5.4e-15 85.9 105 46.7
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.7e-14 83.6 75 52.0
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.5e-14 83.2 132 39.4
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-13 81.3 122 41.8
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-13 80.5 208 32.7
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.1e-12 78.2 133 38.3
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.1e-12 78.2 118 41.5
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-12 77.4 149 35.6
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.5e-12 77.0 82 46.3
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-11 73.9 101 42.6
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 2.6e-09 67.0 64 51.6
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.9e-08 63.5 66 48.5
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-07 61.6 116 37.1
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 1.4e-07 61.2 228 29.4
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-07 60.8 144 33.3
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 5.4e-07 59.3 52 61.5
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 7.1e-07 58.9 82 37.8


User provided reference genes

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