Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 0.0e+00 1162.5 584 100.0
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 0.0e+00 1145.2 584 98.6
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.2e-79 300.8 560 39.5
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 6.7e-76 289.3 676 34.9
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 1.2e-69 268.5 409 44.3
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 1.7e-66 258.1 227 58.1
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 5.5e-62 243.0 276 46.7
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 4.7e-61 240.0 207 58.5
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.8e-60 238.0 271 48.7
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 3.0e-60 237.3 164 67.7
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.2e-59 235.3 523 33.8
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 2.6e-59 234.2 270 48.1
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 5.7e-59 233.0 263 48.7
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 7.5e-59 232.6 409 35.9
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 7.5e-59 232.6 215 55.8
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 9.8e-59 232.3 201 60.2
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 2.4e-57 227.6 297 44.1
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 2.4e-57 227.6 154 68.2
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 7.0e-57 226.1 184 58.2
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 7.0e-57 226.1 184 58.2
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.0e-57 226.1 469 36.5
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.6e-56 224.9 197 58.9
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.5e-56 223.8 160 64.4
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.5e-56 223.4 152 68.4
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.3e-55 221.9 157 66.2
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 2.9e-55 220.7 173 60.1
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 3.8e-55 220.3 271 46.9
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 6.6e-55 219.5 311 44.7
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 6.6e-55 219.5 159 63.5
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 8.6e-55 219.2 392 38.8
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.9e-54 218.0 155 64.5
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 2.5e-54 217.6 151 66.9
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 2.5e-54 217.6 151 66.9
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.2e-53 215.3 228 50.4
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 1.2e-53 215.3 196 54.6
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.6e-53 214.9 173 61.8
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.6e-53 214.9 198 57.6
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.6e-53 214.9 198 57.6
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.1e-53 214.5 196 54.6
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 2.8e-53 214.2 271 47.2
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 3.6e-53 213.8 173 60.1
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 6.1e-53 213.0 315 41.6
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 8.0e-53 212.6 309 41.1
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.0e-52 212.2 202 55.0
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.0e-52 212.2 202 55.9
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.4e-52 211.8 232 50.4
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.8e-52 211.5 294 43.2
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.8e-52 211.5 294 43.2
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.8e-52 211.5 273 44.3
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-52 211.5 176 59.1
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 2.3e-52 211.1 365 39.5
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 3.0e-52 210.7 154 63.6
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 4.0e-52 210.3 170 58.2
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 5.2e-52 209.9 152 63.2
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 5.2e-52 209.9 494 33.2
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 6.8e-52 209.5 174 57.5
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 6.8e-52 209.5 156 63.5
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 8.9e-52 209.1 162 60.5
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.2e-51 208.8 159 61.0
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.5e-51 208.4 201 51.2
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.6e-51 207.6 152 63.2
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.6e-51 207.6 152 63.2
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 3.4e-51 207.2 185 54.1
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 3.4e-51 207.2 185 54.1
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 3.4e-51 207.2 290 42.8
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.4e-51 206.8 315 40.6
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 5.7e-51 206.5 203 54.7
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 9.8e-51 205.7 192 56.2
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.3e-50 205.3 148 63.5
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 1.7e-50 204.9 203 51.7
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 2.2e-50 204.5 195 58.5
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 6.4e-50 203.0 150 61.3
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.4e-49 201.8 170 55.3
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.4e-49 201.8 266 44.0
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 3.2e-49 200.7 162 58.0
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.2e-49 200.7 166 57.8
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.1e-49 200.3 174 56.3
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.7e-48 197.6 152 60.5
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.6e-48 196.8 152 60.5
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 7.8e-48 196.1 176 54.5
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 7.8e-48 196.1 176 54.5
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 7.8e-48 196.1 176 54.5
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 7.8e-48 196.1 176 54.5
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.7e-47 194.9 146 63.0
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 3.9e-47 193.7 187 54.5
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 5.0e-47 193.4 166 57.8
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 6.6e-47 193.0 247 43.7
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 8.6e-47 192.6 226 45.1
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.1e-46 192.2 448 34.4
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 5.6e-46 189.9 226 45.1
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.5e-46 189.1 160 57.5
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 1.6e-45 188.3 428 33.4
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 4.7e-45 186.8 146 59.6
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 8.0e-45 186.0 171 55.6
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 3.1e-44 184.1 543 30.9
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.2e-43 182.2 207 50.7
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 2.9e-42 177.6 272 41.2
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 8.3e-42 176.0 236 43.6
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.1e-41 175.6 144 56.2
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.4e-41 175.3 141 54.6
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.4e-41 175.3 152 53.9
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 5.4e-41 173.3 149 54.4
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.6e-40 171.8 252 41.3
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 3.5e-40 170.6 141 53.2
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 4.6e-40 170.2 136 55.1
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.0e-39 169.1 157 49.0
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 8.6e-39 166.0 131 56.5
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 5.6e-38 163.3 179 46.9
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 9.5e-38 162.5 432 33.1
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.2e-37 162.2 176 46.6
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.1e-37 161.4 199 47.2
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 5.2e-36 156.8 170 44.7
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 6.8e-36 156.4 166 53.0
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 2.6e-35 154.5 98 69.4
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 2.9e-34 151.0 133 51.9
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 3.7e-34 150.6 133 50.4
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 6.0e-32 143.3 200 44.5
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 6.0e-32 143.3 200 44.5
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 6.6e-31 139.8 133 51.9
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 9.5e-30 136.0 133 46.6
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.6e-29 135.2 100 62.0
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.8e-28 131.7 99 57.6
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 5.8e-27 126.7 99 57.6
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 9.9e-27 125.9 134 47.8
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 4.1e-25 120.6 99 56.6
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 2.1e-24 118.2 99 52.5
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 2.7e-24 117.9 125 48.0
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 7.8e-24 116.3 95 53.7
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 3.0e-23 114.4 133 43.6
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 4.3e-22 110.5 96 56.2
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.4e-19 100.5 68 66.2
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 6.4e-18 96.7 58 72.4
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 8.4e-18 96.3 82 61.0
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.9e-17 95.1 68 63.2
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 3.2e-17 94.4 54 77.8
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 3.2e-17 94.4 122 41.8
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 4.2e-17 94.0 95 49.5
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.6e-16 92.0 69 60.9
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 7.8e-16 89.7 98 50.0
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 1.0e-15 89.4 55 72.7
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 1.7e-15 88.6 84 58.3
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 7.3e-14 83.2 105 44.8
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.8e-12 78.6 243 31.7
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 1.2e-11 75.9 326 27.9
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 1.7e-10 72.0 40 75.0
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.4e-09 68.2 77 46.8
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 4.2e-09 67.4 174 34.5
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 1.2e-08 65.9 63 46.0
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 3.5e-08 64.3 55 56.4
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 3.9e-07 60.8 91 37.4
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 4.3e-06 57.4 38 63.2


User provided reference genes

Program Settings