Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 4.6e-197 691.0 346 100.0
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.3e-195 684.9 347 99.4
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.1e-137 493.8 315 77.1
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 4.1e-137 491.9 351 70.9
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.8e-135 485.3 332 73.2
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.7e-132 474.6 333 71.5
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.3e-130 470.3 326 71.8
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 6.3e-130 468.0 338 70.7
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.1e-129 467.2 338 70.4
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 4.5e-128 461.8 350 67.7
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 7.7e-128 461.1 331 69.5
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.0e-127 460.7 351 67.8
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 3.8e-127 458.8 327 69.1
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.4e-126 456.8 348 66.4
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 3.2e-126 455.7 340 69.1
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 5.5e-126 454.9 337 67.1
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.2e-125 453.8 347 66.6
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 4.7e-125 451.8 333 67.0
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 6.1e-125 451.4 312 72.1
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 5.1e-124 448.4 313 70.0
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.5e-123 446.8 332 68.1
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.5e-123 446.8 328 69.5
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 5.7e-123 444.9 337 65.9
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.3e-122 443.7 327 66.4
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.2e-122 443.0 319 66.5
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.2e-122 443.0 370 62.7
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 2.2e-122 443.0 330 69.1
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 2.8e-122 442.6 340 65.6
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.2e-122 441.0 311 68.8
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 8.2e-122 441.0 327 66.1
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.4e-121 440.3 348 63.5
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.4e-121 440.3 348 63.5
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 9.1e-121 437.6 324 66.4
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.5e-120 436.8 311 68.2
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.5e-120 436.8 311 68.2
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.6e-120 436.0 330 67.3
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.4e-120 435.6 311 67.8
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.5e-120 435.3 339 65.8
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 5.9e-120 434.9 343 63.8
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.0e-119 434.1 330 67.9
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 2.2e-119 433.0 321 65.7
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 3.8e-119 432.2 340 64.1
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 8.5e-119 431.0 340 63.8
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.1e-118 430.6 343 63.6
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.5e-118 429.5 327 68.8
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 2.5e-118 429.5 346 62.4
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 4.2e-118 428.7 343 63.3
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 5.5e-118 428.3 343 62.7
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 7.2e-118 427.9 321 65.1
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.7e-117 426.0 332 65.1
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.1e-117 424.9 340 64.4
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.1e-117 424.9 340 64.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.4e-116 423.7 369 60.2
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.8e-116 423.3 332 64.8
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 1.8e-116 423.3 332 64.8
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.3e-116 422.9 339 63.4
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 2.3e-116 422.9 328 63.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 8.8e-116 421.0 349 62.2
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-115 420.6 281 73.3
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.1e-115 420.6 282 74.1
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 4.4e-115 418.7 318 64.8
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 7.4e-115 417.9 431 55.5
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 9.7e-115 417.5 349 62.8
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.7e-114 416.8 312 66.3
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.7e-114 416.8 327 65.1
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 1.7e-114 416.8 338 63.3
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 3.7e-114 415.6 312 66.0
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 4.8e-114 415.2 372 57.8
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.1e-113 414.1 340 63.2
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.1e-113 414.1 328 64.3
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.4e-113 413.7 311 65.0
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.8e-113 413.3 330 62.7
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 9.1e-113 411.0 340 62.6
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.2e-112 410.6 334 63.2
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.6e-112 410.2 321 65.4
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 5.9e-112 408.3 329 63.5
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 1.3e-111 407.1 326 62.9
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.7e-111 406.8 340 62.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.7e-111 406.8 319 62.7
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.2e-111 406.4 267 74.2
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 3.8e-111 405.6 265 74.7
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 3.8e-111 405.6 320 62.2
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 6.5e-111 404.8 331 61.6
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 8.5e-111 404.4 380 57.9
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 3.2e-110 402.5 311 64.3
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.2e-109 400.6 323 63.2
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.6e-109 400.2 312 63.1
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 3.6e-109 399.1 330 61.5
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.0e-108 396.0 323 62.8
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 5.2e-108 395.2 311 64.0
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 6.3e-106 388.3 263 69.2
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 4.1e-105 385.6 244 76.6
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.5e-102 377.1 329 57.8
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.6e-101 372.5 257 69.3
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 3.0e-100 369.4 292 63.0
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 6.3e-98 361.7 250 69.2
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.5e-94 350.5 341 54.5
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 2.3e-92 343.2 316 55.4
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.8e-92 341.7 316 53.8
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.0e-91 340.1 337 54.3
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 2.6e-91 339.7 318 56.0
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 2.2e-90 336.7 319 55.5
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.8e-90 336.3 323 57.9
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 6.3e-90 335.1 328 56.4
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 3.1e-89 332.8 205 73.2
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.6e-88 330.5 339 55.2
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.0e-88 330.1 322 55.0
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 7.8e-88 328.2 280 61.8
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.3e-87 327.4 369 52.0
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 2.3e-87 326.6 290 57.6
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.1e-86 324.3 311 53.7
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.5e-86 323.2 324 55.9
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 4.3e-86 322.4 218 70.2
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.6e-85 320.5 346 54.0
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 6.8e-84 315.1 396 48.5
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-83 314.3 317 54.9
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 4.4e-83 312.4 303 53.5
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.8e-83 312.0 319 54.2
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.9e-81 307.0 246 61.4
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 7.8e-80 301.6 260 58.8
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.0e-76 289.3 248 58.1
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 3.4e-75 286.2 350 48.9
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.3e-74 284.3 274 54.0
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.8e-68 263.8 353 43.3
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.5e-62 244.2 342 40.6
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.9e-62 243.8 307 45.3
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 2.5e-62 243.4 334 41.9
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 9.5e-62 241.5 155 76.8
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 8.9e-60 235.0 303 41.6
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.8e-52 210.7 244 48.0
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.5e-51 207.6 135 71.9
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.5e-51 207.6 151 68.2
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 3.0e-47 193.4 113 78.8
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.9e-46 190.7 253 39.9
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 2.8e-45 186.8 244 43.0
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.1e-45 185.3 155 55.5
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 4.5e-43 179.5 200 43.5
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 7.6e-43 178.7 334 37.7
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.7e-42 177.6 300 35.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 2.4e-41 173.7 249 42.6
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 6.9e-36 155.6 223 40.8
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 3.2e-33 146.7 101 68.3
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 1.0e-31 141.7 253 33.2
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.3e-31 140.6 316 30.7
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.2e-24 118.2 236 31.8
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.6e-24 117.9 402 26.6
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.7e-24 117.1 301 29.2
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 4.6e-24 116.3 75 76.0
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 4.6e-24 116.3 75 76.0
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.0e-23 115.2 75 74.7
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 2.3e-23 114.0 317 32.2
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 2.5e-22 110.5 114 44.7
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 9.7e-22 108.6 84 65.5
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.1e-20 105.1 105 42.9
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.4e-19 100.1 301 27.9
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.4e-19 100.1 153 38.6
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 2.5e-17 94.0 303 26.4
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 2.5e-17 94.0 212 31.6
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 5.5e-17 92.8 246 29.3
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 9.7e-14 82.0 60 63.3
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 5.0e-10 69.7 78 51.3
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.8e-07 61.2 104 40.4


User provided reference genes

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