Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 1.2e-111 406.8 236 100.0
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.2e-110 402.5 236 98.7
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 1.9e-53 213.4 239 62.8
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 1.6e-47 193.7 234 56.4
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 3.2e-45 186.0 244 47.1
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 4.2e-45 185.7 237 49.4
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 3.0e-43 179.5 231 51.1
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 2.0e-42 176.8 232 47.8
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 5.7e-42 175.3 239 47.3
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 5.7e-42 175.3 245 47.8
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 2.8e-41 172.9 235 46.8
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 2.4e-40 169.9 245 46.9
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 5.4e-40 168.7 238 47.9
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 3.5e-39 166.0 237 47.3
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 4.5e-39 165.6 233 49.4
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 5.6e-37 158.7 235 48.5
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 4.7e-36 155.6 238 43.7
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 1.0e-35 154.5 237 47.3
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 3.0e-35 152.9 237 43.5
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 7.5e-34 148.3 231 43.3
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 7.5e-34 148.3 232 51.3
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 9.8e-34 147.9 237 46.0
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 9.8e-34 147.9 232 50.9
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 9.8e-34 147.9 234 53.4
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.3e-33 147.5 232 51.3
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 2.2e-33 146.7 232 43.5
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 2.2e-33 146.7 233 44.2
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 2.2e-33 146.7 233 42.9
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 2.9e-33 146.4 257 42.4
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 4.9e-33 145.6 249 41.4
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 8.3e-33 144.8 232 44.0
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 1.4e-32 144.1 226 46.9
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 1.8e-32 143.7 237 42.6
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 4.1e-32 142.5 243 42.4
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 1.2e-31 141.0 237 45.6
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 1.3e-30 137.5 231 42.9
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 1.7e-30 137.1 233 48.5
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 1.7e-30 137.1 235 48.5
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 1.7e-30 137.1 239 47.3
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 2.3e-30 136.7 235 51.9
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 5.0e-30 135.6 237 46.0
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 5.0e-30 135.6 249 41.8
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 6.6e-30 135.2 231 48.9
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 6.6e-30 135.2 244 45.9
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 6.6e-30 135.2 231 48.9
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 6.6e-30 135.2 243 50.2
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 1.1e-29 134.4 240 47.5
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 1.9e-29 133.7 236 42.8
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 1.9e-29 133.7 241 38.6
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 2.5e-29 133.3 244 40.2
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 2.5e-29 133.3 231 42.0
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 7.3e-29 131.7 247 40.5
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 7.3e-29 131.7 243 38.3
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 7.3e-29 131.7 229 49.8
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 1.2e-28 131.0 234 42.3
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 1.6e-28 130.6 227 41.4
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 6.2e-28 128.6 153 52.9
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 1.0e-27 127.9 200 52.5
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 1.4e-27 127.5 236 41.9
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 3.1e-27 126.3 240 41.7
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 3.1e-27 126.3 240 41.7
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 3.1e-27 126.3 240 41.7
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 5.2e-27 125.6 233 39.9
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.2e-27 125.6 239 42.3
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 1.5e-26 124.0 237 40.9
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 1.5e-26 124.0 232 42.2
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 9.8e-26 121.3 245 38.0
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 9.8e-26 121.3 251 37.8
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 1.7e-25 120.6 229 40.6
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.2e-25 120.2 261 36.8
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 4.9e-25 119.0 286 37.8
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 6.4e-25 118.6 191 43.5
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 1.1e-24 117.9 233 42.9
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 1.4e-24 117.5 236 38.6
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 1.9e-24 117.1 236 39.8
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 2.4e-24 116.7 225 40.0
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 3.2e-24 116.3 243 37.4
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 5.4e-24 115.5 238 39.1
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 9.2e-24 114.8 243 38.3
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 1.6e-23 114.0 221 40.7
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.6e-23 114.0 251 38.6
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 4.6e-23 112.5 233 38.2
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 7.8e-23 111.7 225 39.1
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 3.0e-22 109.8 245 36.3
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 2.5e-21 106.7 231 39.0
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 2.5e-21 106.7 356 29.5
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 3.3e-21 106.3 151 47.7
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 7.3e-21 105.1 228 38.2
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 2.8e-20 103.2 233 35.2
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 4.7e-20 102.4 75 65.3
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 4.0e-19 99.4 235 37.0
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 4.0e-19 99.4 78 62.8
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 4.0e-19 99.4 170 41.8
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 5.2e-19 99.0 77 62.3
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 5.2e-19 99.0 212 34.9
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 8.9e-19 98.2 234 35.9
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 2.0e-18 97.1 133 48.1
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 7.5e-18 95.1 145 45.5
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 9.8e-18 94.7 75 60.0
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 2.2e-17 93.6 79 60.8
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 2.9e-17 93.2 71 67.6
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 3.7e-17 92.8 228 34.6
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 8.3e-17 91.7 158 39.9
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 2.4e-16 90.1 244 39.8
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 3.2e-16 89.7 122 45.1
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 2.1e-15 87.0 231 36.4
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 1.0e-14 84.7 197 37.1
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 1.1e-13 81.3 150 38.7
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 2.5e-13 80.1 142 38.0
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 4.3e-13 79.3 236 29.7
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 1.8e-11 73.9 235 29.8
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 1.8e-11 73.9 230 33.0
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 6.8e-11 72.0 147 40.1
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 2.9e-09 66.6 232 31.5
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 4.9e-09 65.9 76 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 9.2e-08 61.6 237 27.0
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 9.2e-08 61.6 146 34.9
HPP92_020257 Vanilla planifolia HOM05D006684 ORTHO05D008443 4.6e-07 59.3 173 32.4
Hma1.2p1_0053F.1_g030890 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 3.0e-06 56.6 127 37.8


User provided reference genes

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